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mRNA_decapping_enzyme_-Cop-D9R-

Euk-Vir

Mythimna_separata_entomopoxvirus_L

mRNA_decapping_enzyme_-Cop-D9R-__YP_008003598__Mythimna_separata_entomopoxvirus_L__1293572

Identity

Accession:
YP_008003598 ↗
Protein ID:
mRNA_decapping_enzyme_-Cop-D9R-
Kingdom:
euk

Quality

77.8 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Betaentomopoxvirus› Mythimna_separata_entomopoxvirus_'L'

TaxID: 1293572

Cluster

View cluster (50 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-68_160-271
PDB
Domain cluster: rep: decapping_enzyme__YP_005296292__Cotia_virus_SPAn232__930275__D21-62_124-184_200-215
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00293.35 best NUDIX 26.7 7.10e-06 83.1% 85.1%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4kyxA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.74 57.0 6.15e-01 82.5% 91.4%
3qsjA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.73 57.0 5.07e-01 81.2% 98.6%
3a6sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.73 50.0 5.62e-01 85.0% 89.6%
3o8sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.72 53.0 5.73e-01 82.5% 88.8%
2kdvA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.72 57.0 5.71e-01 83.1% 88.4%
3edsA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.71 50.0 5.51e-01 81.2% 86.5%
3grnA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.71 55.0 5.89e-01 81.2% 92.8%
1ryaA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.69 54.0 5.49e-01 82.5% 86.9%
1sjyA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.69 54.0 5.56e-01 81.9% 87.7%
5qoqA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.69 55.0 5.77e-01 84.4% 89.9%
1f3yA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.68 60.0 6.02e-01 94.4% 91.5%
4jzsA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.68 58.0 5.93e-01 97.5% 93.0%
2o5fB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.64 53.0 5.30e-01 86.3% 93.8%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 25.0 3.76e-01 100.0% 90.5%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5060978 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.81 58.0 6.19e-01 84.4% 82.9%
5072585 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.77 71.0 5.83e-01 95.6% 98.1%
1088358 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.76 57.0 6.25e-01 81.2% 91.8%
4429837 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.75 59.0 5.99e-01 84.4% 82.5%
4104588 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.74 60.0 5.88e-01 85.0% 79.2%
3274270 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.74 65.0 5.46e-01 91.9% 89.0%
5038614 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.74 55.0 6.03e-01 85.0% 93.8%
4941147 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.73 56.0 5.94e-01 80.6% 89.3%
4937691 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.73 52.0 5.62e-01 82.5% 85.9%
3970070 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.72 55.0 5.87e-01 80.0% 89.3%
4011356 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.72 59.0 5.90e-01 84.4% 86.3%
3964102 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.72 57.0 6.13e-01 82.5% 96.4%
3504415 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.72 54.0 5.85e-01 83.1% 89.2%
4995185 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.72 50.0 5.47e-01 83.1% 86.2%
143959 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.71 50.0 5.51e-01 81.2% 86.5%
4012146 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.70 62.0 4.87e-01 95.0% 95.1%
4965592 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.69 56.0 5.78e-01 84.4% 96.7%
5018740 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.68 56.0 5.47e-01 85.0% 90.0%
259934 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.68 59.0 5.94e-01 97.5% 93.0%
5073188 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.67 50.0 5.49e-01 80.0% 94.6%
D2 high residues 71-144
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5j1gA00 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 46.0 3.24e-01 79.7% 40.8%
3qz1D00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.60 46.0 2.85e-01 82.4% 41.5%
3cf6E03 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.59 51.0 4.29e-01 100.0% 67.2%
1l3lA01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.58 47.0 3.70e-01 93.2% 97.6%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.58 40.0 3.48e-01 73.0% 69.2%
4bwiB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.57 41.0 3.13e-01 77.0% 100.0%
4hteA03 1.10.167.30 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › 0.57 42.0 4.13e-01 78.4% 75.0%
1f2eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 46.0 4.16e-01 91.9% 76.4%
4qclA05 1.10.132.60 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain 0.56 48.0 3.71e-01 95.9% 89.9%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.56 46.0 4.33e-01 100.0% 74.5%
3mvpA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 48.0 3.93e-01 100.0% 77.9%
4o6yB00 1.20.120.1770 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 41.0 3.04e-01 81.1% 39.3%
3bvoA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.55 41.0 3.97e-01 81.1% 82.6%
1ywfA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 47.0 3.35e-01 97.3% 72.6%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.55 42.0 3.52e-01 82.4% 63.8%
4wzxA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.55 41.0 4.11e-01 81.1% 88.0%
1juqC00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 44.0 3.62e-01 91.9% 47.0%
8amzP01 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 44.0 2.88e-01 93.2% 25.6%
4zi3D00 1.20.1520.10 Mainly Alpha › Up-down Bundle › Adp-ribosylation factor-like protein 2-binding protein fold › ADP-ribosylation factor-like 2-binding protein, domain 0.54 41.0 3.50e-01 82.4% 75.0%
3i5pA01 1.25.40.450 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, N-terminal subdomain 0.54 47.0 3.88e-01 97.3% 87.0%
4gf0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 45.0 4.03e-01 97.3% 80.5%
4zvaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 45.0 3.64e-01 95.9% 59.1%
1chuA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.54 40.0 3.84e-01 81.1% 77.3%
3o4zA02 1.25.40.720 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tel2 C-terminal domain 0.53 45.0 3.45e-01 98.6% 59.3%
4fxdA06 1.10.132.60 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › B family DNA polymerase, thumb domain 0.53 45.0 3.57e-01 95.9% 92.5%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 39.0 3.60e-01 81.1% 97.1%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 39.0 3.43e-01 81.1% 86.3%
3vhlA02 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.52 43.0 3.77e-01 95.9% 94.2%
2wsiA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 37.0 2.60e-01 85.1% 20.7%
4iluA02 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.51 42.0 3.84e-01 100.0% 69.4%
1uz3B00 1.10.1240.40 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › ENT domain 0.51 40.0 3.74e-01 89.2% 74.2%
1ze0A01 1.20.120.700 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nitrate reductase, subunit delta (NarJ) 0.51 38.0 3.74e-01 83.8% 100.0%
1cmjA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 39.0 2.55e-01 86.5% 69.9%
3q23A04 6.10.140.1370 Special › Helix non-globular › Helix Hairpins › 0.50 37.0 3.53e-01 81.1% 82.4%
5vjhB03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 43.0 3.16e-01 100.0% 56.3%
7tj9A01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.50 37.0 3.37e-01 81.1% 71.7%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3833833 109.4.1.1274 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, PPR_long 0.72 56.0 3.50e-01 97.3% 14.9%
4001268 4156.1.1.4 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C 0.69 46.0 3.74e-01 90.5% 37.8%
3738679 376.1.3.60 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PLU-1 0.69 41.0 4.03e-01 89.2% 55.0%
3400690 109.4.1.673 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fanconi_A_N 0.68 52.0 3.36e-01 91.9% 17.0%
3259882 109.4.1.134 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SPIN90_LRD 0.66 60.0 3.77e-01 98.6% 29.8%
3236048 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 56.0 3.85e-01 98.6% 35.4%
3435024 109.4.1.1262 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_long 0.62 46.0 2.86e-01 97.3% 12.9%
5074225 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.61 45.0 4.23e-01 78.4% 85.6%
3724570 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.60 44.0 4.59e-01 90.5% 82.9%
3446493 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 48.0 3.96e-01 91.9% 55.2%
3168920 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 49.0 3.31e-01 89.2% 38.5%
3660543 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 46.0 3.73e-01 87.8% 43.2%
3626611 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 47.0 2.95e-01 87.8% 16.8%
3820045 603.1.1.118 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › DUF7610 0.58 42.0 4.05e-01 78.4% 87.1%
3624742 109.4.1.555 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-5 0.58 50.0 2.78e-01 100.0% 91.1%
5031891 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.58 49.0 4.39e-01 95.9% 72.2%
3929109 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.57 42.0 3.79e-01 81.1% 74.5%
4942333 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 47.0 3.48e-01 93.2% 34.9%
3590947 1141.1.1.0 ↗ alpha arrays › Glycosyl transferase TarS linker domain › Glycosyl transferase TarS linker domain › Glycosyl transferase TarS linker domain 0.56 48.0 4.28e-01 100.0% 97.3%
3940870 3069.1.1.1 ↗ alpha arrays › BART › BART › BART › ARL2_Bind_BART 0.56 41.0 3.50e-01 82.4% 71.1%
3366786 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 48.0 2.85e-01 98.6% 20.9%
3667215 109.1.1.37 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_N_2 0.56 47.0 3.45e-01 97.3% 41.4%
4554674 138.1.1.0 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain 0.56 47.0 4.12e-01 94.6% 64.6%
3306390 604.9.1.1 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.56 41.0 3.80e-01 83.8% 68.6%
3224103 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 41.0 3.52e-01 81.1% 90.4%
3529785 601.1.2.6 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_IBS2B 0.55 41.0 3.53e-01 82.4% 66.4%
5009775 601.33.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain 0.55 41.0 3.81e-01 94.6% 62.1%
3186734 109.4.1.1259 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_PBS, HEAT_2 0.55 46.0 3.10e-01 100.0% 48.1%
4121800 148.1.3.367 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF5595 0.53 39.0 3.34e-01 81.1% 60.0%
157755 601.7.1.7 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › NTase_sub_bind 0.52 46.0 3.99e-01 100.0% 73.1%
5074457 1030.1.1.0 ↗ alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 0.51 41.0 3.76e-01 93.2% 100.0%
1820965 601.21.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › FAD-dependent thiol oxidase › FAD-dependent thiol oxidase › Evr1_Alr 0.51 38.0 3.12e-01 79.7% 62.0%
3686594 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.51 39.0 3.86e-01 83.8% 82.5%
3937986 5057.1.1.1 ↗ alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb 0.51 37.0 2.89e-01 81.1% 40.5%