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mRNA_decapping_enzyme_-Cop-D9R-

Euk-Vir

Choristoneura_biennis_entomopoxvirus

mRNA_decapping_enzyme_-Cop-D9R-__YP_008004173__Choristoneura_biennis_entomopoxvirus__10288

Identity

Accession:
YP_008004173 ↗
Protein ID:
mRNA_decapping_enzyme_-Cop-D9R-
Kingdom:
euk

Quality

78.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 43-70_185-262
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5cfjA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.75 67.0 6.02e-01 94.3% 99.3%
1ktgA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.74 66.0 6.02e-01 94.3% 98.5%
3qsjA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.72 63.0 4.87e-01 94.3% 97.7%
2kdvA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.71 62.0 5.30e-01 94.3% 93.9%
4mpoB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.71 62.0 5.48e-01 93.4% 94.6%
4nfwF00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.71 62.0 5.40e-01 93.4% 86.3%
4kyxA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.70 62.0 5.64e-01 94.3% 97.8%
4k6eA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.70 61.0 5.45e-01 93.4% 93.8%
1vc9A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.69 59.0 5.65e-01 90.6% 100.0%
3n77A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.69 61.0 5.47e-01 93.4% 97.2%
1ryaA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.69 59.0 5.19e-01 94.3% 90.0%
1f3yA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.69 63.0 5.41e-01 100.0% 95.2%
6scxA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.69 58.0 5.32e-01 89.6% 100.0%
2yyhA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.68 60.0 5.49e-01 94.3% 96.4%
2qjoB02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.68 59.0 5.29e-01 93.4% 97.2%
3gz8C01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.68 58.0 5.29e-01 91.5% 99.3%
6uufA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.68 60.0 5.23e-01 94.3% 92.8%
1sjyA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.67 59.0 5.21e-01 95.3% 92.9%
5qoqA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.67 58.0 5.13e-01 92.5% 98.7%
1q33A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.67 57.0 4.80e-01 91.5% 93.6%
4dywA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.67 59.0 5.47e-01 94.3% 99.2%
2b0vA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.66 58.0 5.18e-01 94.3% 91.9%
1vk6A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.65 56.0 5.16e-01 91.5% 96.9%
3sonA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.65 56.0 5.01e-01 94.3% 95.2%
3rh7A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.63 57.0 5.32e-01 97.2% 97.7%
1k2eA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.61 51.0 4.56e-01 92.5% 87.5%
3gwyB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 51.0 4.76e-01 94.3% 98.5%
2azwA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 52.0 4.73e-01 100.0% 96.6%
6scxC01 3.90.79.20 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › 0.54 48.0 4.10e-01 100.0% 70.9%
3clvA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 43.0 3.65e-01 88.7% 86.3%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 38.0 3.87e-01 76.4% 100.0%
3regA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 3.59e-01 86.8% 87.7%
1d5cA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 42.0 3.65e-01 87.7% 90.1%
3t1oA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 44.0 3.67e-01 95.3% 89.6%
5lddC00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 42.0 3.69e-01 93.4% 91.7%
3x1lB03 2.60.40.4350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 36.0 3.65e-01 74.5% 87.6%
2bmjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 41.0 3.48e-01 87.7% 83.9%
5ksoA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 42.0 3.68e-01 93.4% 91.0%
8fwpB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 39.0 3.01e-01 84.0% 74.5%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3855125 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.81 75.0 5.33e-01 100.0% 86.8%
5072585 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.79 74.0 5.41e-01 100.0% 90.6%
2120699 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.78 69.0 6.27e-01 94.3% 97.8%
1124600 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.78 68.0 6.08e-01 92.5% 97.2%
3777810 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.77 57.0 5.86e-01 75.5% 100.0%
4011356 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.74 64.0 5.54e-01 93.4% 93.1%
5041586 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.74 66.0 5.98e-01 95.3% 98.6%
4965094 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.73 64.0 5.74e-01 91.5% 94.3%
4944491 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.73 65.0 5.83e-01 93.4% 96.4%
3292450 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.73 66.0 5.47e-01 100.0% 90.3%
3263069 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.72 65.0 5.29e-01 100.0% 87.0%
3820378 221.4.1.9 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.72 63.0 5.11e-01 93.4% 79.5%
4265401 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.72 63.0 5.26e-01 95.3% 86.7%
4867507 221.4.1.18 a+b two layers › beta-Grasp › Nudix › Nudix › NUDT9_N 0.72 64.0 4.69e-01 97.2% 79.8%
5079541 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.71 62.0 5.34e-01 93.4% 88.1%
4284391 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.71 63.0 5.29e-01 97.2% 98.3%
4104588 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.70 62.0 5.27e-01 95.3% 87.5%
5054408 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.70 62.0 5.32e-01 94.3% 95.0%
4012146 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.70 62.0 4.39e-01 98.1% 61.9%
5001210 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.70 60.0 5.34e-01 93.4% 94.7%
4935762 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.70 60.0 5.47e-01 93.4% 95.7%
5058232 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.70 61.0 5.68e-01 93.4% 97.7%
5060978 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.69 60.0 5.46e-01 93.4% 92.9%
4951993 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.69 59.0 5.33e-01 92.5% 92.3%
4937959 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.69 59.0 5.62e-01 92.5% 100.0%
5051216 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.69 61.0 5.31e-01 94.3% 87.1%
5018740 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.69 62.0 5.26e-01 97.2% 94.7%
4013718 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.69 60.0 5.01e-01 93.4% 96.0%
3597706 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.69 61.0 5.10e-01 95.3% 98.9%
4948211 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.69 60.0 5.25e-01 92.5% 89.3%
3951244 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.69 60.0 5.23e-01 93.4% 89.7%
4962638 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.68 60.0 5.25e-01 94.3% 94.8%
3965019 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.68 60.0 4.66e-01 94.3% 95.5%
2146540 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.68 59.0 5.35e-01 93.4% 99.3%
4104780 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.68 61.0 5.14e-01 100.0% 89.4%
6244 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.66 58.0 5.21e-01 94.3% 93.2%
3704586 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.66 58.0 5.01e-01 94.3% 89.4%
5058061 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.64 56.0 5.03e-01 94.3% 100.0%
5053953 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.63 56.0 5.07e-01 95.3% 95.7%
4985589 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.63 57.0 5.08e-01 100.0% 100.0%
6242 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.59 52.0 4.73e-01 100.0% 96.6%
3850055 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.56 49.0 3.81e-01 100.0% 77.6%
3714786 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.55 45.0 3.66e-01 88.7% 77.5%
5067896 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.55 47.0 3.89e-01 94.3% 84.7%
3455188 2004.1.1.164 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.55 47.0 3.73e-01 95.3% 91.1%
3707717 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 48.0 3.57e-01 97.2% 78.2%
3608009 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.55 45.0 3.65e-01 88.7% 75.0%
3249053 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.54 47.0 3.75e-01 95.3% 82.9%
3262894 59.1.3.1 beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_pol_I_A49 0.54 38.0 3.84e-01 71.7% 87.6%
3881280 59.1.3.1 beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_pol_I_A49 0.54 37.0 3.71e-01 70.8% 89.1%
3731916 59.1.3.1 beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_pol_I_A49 0.54 37.0 3.70e-01 70.8% 85.5%
5077488 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.54 45.0 3.78e-01 91.5% 92.2%
3556743 59.1.3.1 beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_pol_I_A49 0.53 37.0 3.61e-01 70.8% 87.0%
5052579 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.53 44.0 3.68e-01 89.6% 84.4%
3591592 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.53 44.0 3.46e-01 93.4% 68.8%
3600530 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 45.0 3.67e-01 96.2% 85.9%
5051456 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 44.0 3.68e-01 92.5% 85.9%
3594480 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 43.0 3.58e-01 89.6% 79.3%
3197903 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 45.0 3.62e-01 94.3% 88.8%
5050858 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 45.0 3.74e-01 96.2% 87.4%
5045694 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 44.0 3.61e-01 96.2% 77.0%
3406040 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 43.0 3.67e-01 93.4% 84.9%
3392825 59.1.3.0 beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains 0.52 37.0 3.81e-01 74.5% 85.0%
3190277 59.1.3.1 beta complex topology › triple barrel › triple barrel › RNA polymerase I subunits A49/A34.5 dimerization domains › RNA_pol_I_A49 0.52 36.0 3.46e-01 70.8% 85.0%
4017450 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.52 45.0 3.64e-01 99.1% 79.5%
3182571 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 44.0 3.54e-01 93.4% 85.9%
3712896 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 43.0 3.07e-01 91.5% 66.3%
3701183 2004.1.1.164 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.51 43.0 3.39e-01 94.3% 88.7%
5047886 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.51 42.0 3.51e-01 89.6% 82.0%
5044379 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.50 43.0 3.66e-01 95.3% 89.4%
3592260 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 43.0 3.36e-01 94.3% 89.1%
4995864 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.50 43.0 3.64e-01 93.4% 90.9%
3579922 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.50 44.0 3.65e-01 99.1% 81.5%