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mRNA_decapping_enzyme_2-like_protein

Euk-Vir

Tomelloso_virus

mRNA_decapping_enzyme_2-like_protein__YP_009553442__Tomelloso_virus__2053981

Identity

Accession:
YP_009553442 ↗
Protein ID:
mRNA_decapping_enzyme_2-like_protein
Kingdom:
euk

Quality

71.2 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Nudiviridae› Alphanudivirus› Tomelloso_virus

TaxID: 2053981

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-90
PDB
D2 high residues 94-226
PDB
Domain cluster: rep: NUDIX_hydrolase__YP_007354117__Acanthamoeba_polyphaga_moumouvirus__1269028__D1-103
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00293.35 best NUDIX 38.9 1.10e-09 94.0% 82.8%
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4k6eA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.91 87.0 8.43e-01 100.0% 91.0%
5qoqA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.88 85.0 8.12e-01 100.0% 94.6%
4nfwF00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.84 78.0 7.35e-01 100.0% 83.7%
3h95A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.84 73.0 7.44e-01 100.0% 93.1%
4dywA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.83 74.0 7.58e-01 97.7% 96.1%
1ktgA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.83 76.0 7.57e-01 100.0% 93.4%
2a8pA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.82 77.0 6.74e-01 100.0% 82.3%
3qsjA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.82 78.0 6.40e-01 100.0% 90.5%
1sjyA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.82 77.0 7.28e-01 100.0% 85.1%
3grnA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.82 76.0 7.53e-01 100.0% 93.5%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.81 77.0 6.84e-01 100.0% 73.9%
4hfqA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.81 73.0 7.17e-01 100.0% 89.9%
5cfjA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.81 76.0 7.46e-01 100.0% 93.6%
3eesA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.81 72.0 7.31e-01 100.0% 95.4%
3hhjB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.80 73.0 7.42e-01 100.0% 96.9%
2b0vA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.80 75.0 7.25e-01 100.0% 88.5%
3gz8C01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.80 77.0 7.64e-01 100.0% 97.8%
3fk9A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.80 72.0 6.84e-01 100.0% 82.4%
3a6sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.80 68.0 7.08e-01 100.0% 96.0%
2b06A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.80 69.0 6.60e-01 99.2% 80.7%
1v8wA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.79 73.0 6.88e-01 100.0% 83.1%
2yyhA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.79 73.0 7.21e-01 100.0% 92.8%
3id9B00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.79 64.0 6.59e-01 100.0% 88.9%
2fkbC00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.79 72.0 6.65e-01 100.0% 77.8%
1vk6A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.78 68.0 6.92e-01 100.0% 93.9%
3gwyB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.78 70.0 7.01e-01 100.0% 94.7%
4mpoB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.77 73.0 7.03e-01 100.0% 91.2%
3bm4A00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.77 72.0 6.21e-01 100.0% 75.1%
6u7tA03 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.77 65.0 6.78e-01 100.0% 96.7%
2kdvA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.77 72.0 6.65e-01 100.0% 87.2%
6scxA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.76 71.0 7.14e-01 99.2% 98.5%
3f6aA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.76 72.0 6.89e-01 100.0% 94.7%
2o1cA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.76 72.0 6.94e-01 100.0% 93.9%
1f3yA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.76 71.0 6.53e-01 100.0% 90.9%
3sonA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.76 70.0 6.82e-01 100.0% 90.4%
3j7ye00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.75 70.0 7.02e-01 98.5% 98.5%
1k2eA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.74 70.0 6.63e-01 100.0% 86.2%
3fjyA01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.74 70.0 6.57e-01 100.0% 94.3%
1x51A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.73 66.0 6.50e-01 100.0% 90.9%
4j7hA02 3.90.79.40 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › EvaA sugar 2,3-dehydratase subunit 0.68 63.0 5.84e-01 100.0% 81.2%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2623972 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.91 84.0 7.78e-01 100.0% 78.4%
3756709 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.90 87.0 7.59e-01 100.0% 76.2%
3624628 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.90 87.0 8.05e-01 100.0% 88.7%
4027125 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.88 84.0 7.74e-01 100.0% 86.7%
3722325 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.87 84.0 7.49e-01 100.0% 86.9%
3928028 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.87 83.0 7.85e-01 100.0% 94.8%
4956845 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.86 73.0 7.43e-01 100.0% 90.8%
4937938 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.85 74.0 7.73e-01 100.0% 97.6%
3700489 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.85 81.0 6.36e-01 100.0% 78.4%
4942594 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.85 73.0 7.73e-01 100.0% 100.0%
3744820 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.84 81.0 6.47e-01 100.0% 83.0%
4984442 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.84 80.0 7.12e-01 100.0% 86.1%
3934983 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.84 80.0 6.48e-01 100.0% 76.0%
4929722 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.84 80.0 7.02e-01 100.0% 84.9%
4934087 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.84 80.0 7.07e-01 100.0% 87.8%
3899773 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.84 79.0 6.64e-01 100.0% 77.6%
3818481 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.84 79.0 6.44e-01 100.0% 72.5%
4937681 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.83 70.0 7.36e-01 100.0% 96.7%
3240161 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.83 79.0 6.51e-01 100.0% 72.3%
4941147 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.83 74.0 7.32e-01 100.0% 88.6%
3967928 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.83 79.0 6.86e-01 100.0% 82.6%
3842593 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.83 78.0 6.75e-01 100.0% 83.1%
3955933 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.82 78.0 6.29e-01 100.0% 72.8%
3948605 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.82 78.0 6.79e-01 100.0% 75.3%
3514959 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.82 78.0 6.70e-01 100.0% 83.1%
4303708 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.82 77.0 6.76e-01 100.0% 77.4%
3402088 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.82 78.0 6.64e-01 100.0% 79.5%
4937959 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.82 73.0 7.50e-01 97.0% 98.4%
3551009 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.82 78.0 6.46e-01 100.0% 76.3%
5025956 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.82 78.0 7.46e-01 100.0% 96.0%
3882130 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.82 78.0 6.36e-01 100.0% 72.8%
3646764 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.82 77.0 5.80e-01 100.0% 54.6%
3908864 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.82 77.0 6.65e-01 100.0% 77.3%
4011733 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.82 77.0 7.31e-01 100.0% 93.5%
3780755 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.82 77.0 6.38e-01 100.0% 74.5%
5011575 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.81 78.0 7.31e-01 100.0% 90.3%
3815358 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.81 77.0 5.74e-01 100.0% 54.3%
3594929 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.81 77.0 6.37e-01 100.0% 78.5%
3738254 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.81 77.0 6.66e-01 100.0% 82.4%
5065093 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.81 77.0 6.76e-01 100.0% 87.0%
4051921 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.81 77.0 6.64e-01 100.0% 80.9%
3275069 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.81 74.0 6.88e-01 100.0% 79.4%
4972029 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.81 77.0 6.98e-01 100.0% 86.5%
1088859 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.81 73.0 7.17e-01 100.0% 89.9%
3334359 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.81 76.0 6.79e-01 100.0% 89.4%
3968000 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.81 76.0 7.56e-01 100.0% 97.8%
3588992 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.81 74.0 7.42e-01 100.0% 94.8%
3216248 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.80 75.0 5.16e-01 100.0% 42.0%
3944800 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.80 72.0 7.30e-01 97.7% 96.2%
169959 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.80 72.0 6.85e-01 100.0% 82.9%
5030096 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.80 76.0 6.99e-01 100.0% 83.4%
3966822 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.80 70.0 6.56e-01 100.0% 77.8%
5058232 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.80 71.0 7.21e-01 99.2% 95.4%
5081944 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.79 72.0 7.25e-01 100.0% 94.8%
5005521 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.79 75.0 6.74e-01 100.0% 89.1%
5048622 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.79 74.0 6.50e-01 100.0% 75.8%
3282801 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.79 65.0 6.17e-01 87.2% 73.5%
3387989 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.79 74.0 6.45e-01 100.0% 78.8%
3964102 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.79 75.0 7.39e-01 100.0% 96.4%
5051452 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.78 74.0 6.84e-01 100.0% 87.9%
1736533 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.78 74.0 7.14e-01 100.0% 93.2%
3517277 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.78 65.0 6.46e-01 88.0% 87.7%
5041122 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.77 73.0 6.45e-01 100.0% 73.2%
3321639 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.77 73.0 6.70e-01 100.0% 90.3%
3592593 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.77 72.0 6.57e-01 100.0% 90.0%
4963179 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.77 65.0 6.85e-01 92.5% 97.5%
3598941 221.4.1.0 ↗ a+b two layers › beta-Grasp › Nudix › Nudix 0.77 72.0 5.62e-01 100.0% 89.4%
4937543 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.77 72.0 7.02e-01 100.0% 95.2%
3261242 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.77 71.0 6.19e-01 98.5% 75.3%
3539647 221.4.1.9 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.72 67.0 6.44e-01 100.0% 88.7%
3717869 221.4.1.9 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_4 0.72 67.0 6.18e-01 100.0% 86.3%