mT

Euk-Vir

Raccoon-associated_polyomavirus_2

mT__YP_009357243__Raccoon-associated_polyomavirus_2__1978920

Identity

65.9 mean pLDDT

Shotokuvirae› Cossaviricota› Papovaviricetes› Sepolyvirales› Polyomaviridae› Deltapolyomavirus› Raccoon-associated_polyomavirus_2

TaxID: 1978920

View cluster (8 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-87

PDB

Domain cluster: rep: small_T_antigen__YP_007346980__Betapolyomavirus_ptedavyi__1891773__D7-77

D2 medium residues 95-151

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02380.21 best	Papo_T_antigen	30.1	6.10e-07	89.5%	49.5%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2wwxB00	1.20.1260.70	Mainly Alpha › Up-down Bundle › Ferritin ›	0.61	43.0	2.95e-01	73.7%	47.5%
2psmA00	1.20.1250.70	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21	0.58	41.0	3.28e-01	93.0%	36.8%
4nxiA00	3.40.30.10	Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin	0.55	41.0	2.82e-01	80.7%	48.7%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3927695	206.1.1.1 ↗	a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase	0.56	45.0	2.85e-01	91.2%	42.5%
4408728	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.52	38.0	3.50e-01	77.2%	81.3%
5069774	187.1.1.1 ↗	alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_8	0.52	36.0	3.12e-01	71.9%	91.1%
3696646	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.50	44.0	2.75e-01	100.0%	36.7%