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major_capsid_protein_MCP2
Euk-VirPhaeocystis_globosa_virus
major_capsid_protein_MCP2__YP_008052394__Phaeocystis_globosa_virus__251749
Identity
- Accession:
- YP_008052394 ↗
- Protein ID:
- major_capsid_protein_MCP2
- Kingdom:
- euk
Quality
71.7
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Algavirales›
Phycodnaviridae›
Prymnesiovirus›
Phaeocystis_globosa_virus
TaxID: 251749
Cluster
View cluster (126 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 430-505
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5tipA02 | 2.70.9.20 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Major capsid protein Vp54 | 0.91 | 83.0 | 5.81e-01 | 100.0% | 34.4% |
| 1hx6A02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.79 | 63.0 | 5.08e-01 | 100.0% | 46.1% |
| 2vvfA02 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.78 | 66.0 | 5.50e-01 | 100.0% | 54.7% |
| 2vvfA01 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 67.0 | 5.47e-01 | 100.0% | 56.7% |
| 2fcbA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.71 | 42.0 | 3.99e-01 | 100.0% | 50.6% |
| 1hx6B01 | 2.70.9.30 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 | 0.69 | 62.0 | 4.38e-01 | 100.0% | 44.6% |
| 2futA03 | 2.60.40.2750 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.69 | 38.0 | 3.49e-01 | 93.4% | 41.7% |
| 5k6wA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 39.0 | 3.78e-01 | 98.7% | 51.2% |
| 4hwnA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 39.0 | 3.83e-01 | 98.7% | 54.1% |
| 5aa7A00 | 2.70.50.50 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › chitin-binding protein cbp21 | 0.61 | 40.0 | 3.28e-01 | 100.0% | 35.9% |
| 2w40A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 50.0 | 3.51e-01 | 100.0% | 66.1% |
| 2fcbA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 32.0 | 3.14e-01 | 97.4% | 48.8% |
| 3lsoA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 37.0 | 3.49e-01 | 98.7% | 59.8% |
| 7ehgC01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 37.0 | 3.16e-01 | 98.7% | 44.2% |
| 2pfwA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 29.0 | 2.59e-01 | 97.4% | 33.3% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4863942 | 10.2.1.41 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_NCLDV | 0.91 | 85.0 | 6.34e-01 | 100.0% | 45.2% |
| 1186 | 10.2.1.41 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_NCLDV | 0.91 | 83.0 | 5.78e-01 | 100.0% | 34.3% |
| 4850055 | 10.2.1.41 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_NCLDV | 0.89 | 82.0 | 6.21e-01 | 100.0% | 46.3% |
| 2995199 | 10.2.1.41 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_NCLDV | 0.88 | 79.0 | 5.79e-01 | 100.0% | 39.4% |
| 2497009 | 10.2.1.41 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_NCLDV | 0.79 | 71.0 | 5.17e-01 | 100.0% | 38.1% |
| 184943 | 10.2.1.80 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › P2_C | 0.78 | 66.0 | 5.50e-01 | 100.0% | 54.7% |
| 184942 | 10.2.1.56 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › P2_N | 0.75 | 67.0 | 5.47e-01 | 100.0% | 56.7% |
| 3580755 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.73 | 64.0 | 5.16e-01 | 100.0% | 58.0% |
| 5014000 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.71 | 63.0 | 5.15e-01 | 100.0% | 54.8% |
| 2502637 | 10.2.1.45 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Phage_Capsid_P3 | 0.69 | 61.0 | 4.28e-01 | 100.0% | 42.8% |
| 1014044 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.68 | 62.0 | 4.66e-01 | 100.0% | 45.2% |
| 5013999 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.68 | 61.0 | 4.73e-01 | 100.0% | 52.7% |
| 3242830 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.58 | 51.0 | 3.69e-01 | 100.0% | 51.6% |
| 3461175 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 40.0 | 3.74e-01 | 100.0% | 60.0% |
| 3481725 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.52 | 38.0 | 3.56e-01 | 97.4% | 62.1% |
| 3506640 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 42.0 | 3.58e-01 | 100.0% | 53.1% |
D2
medium
residues 64-79_96-110_191-216_230-242_291-327
Domain cluster:
rep: major_capsid_protein__YP_009508644__Common_midwife_toad_virus__540070__D48-85_114-155_177-212_243-266
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5tipA01 | 2.70.9.10 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 | 0.78 | 67.0 | 5.43e-01 | 89.7% | 86.7% |
| 1tme300 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 42.0 | 3.32e-01 | 84.1% | 60.0% |
D3
medium
residues 80-95_243-290