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major_capsid_protein
Euk-VirGallid_alphaherpesvirus_3
major_capsid_protein__NP_066849__Gallid_alphaherpesvirus_3__35250
Identity
- Accession:
- NP_066849 ↗
- Protein ID:
- major_capsid_protein
- Kingdom:
- euk
Quality
73.2
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Mardivirus›
Gallid_alphaherpesvirus_3
TaxID: 35250
Cluster
View cluster (34 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 514-596
Domain cluster:
rep: UL86__YP_009137462__Papio_ursinus_cytomegalovirus__1667587__D507-577
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03122.21 best | Herpes_MCP | 41.4 | 6.20e-11 | 100.0% | 4.8% |
D2
medium
residues 88-107_132-219
D3
medium
residues 253-352_375-412
Domain cluster:
rep: ORF25__YP_001129378__Human_gammaherpesvirus_8__37296__D226-302_366-395
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03122.21 best | Herpes_MCP | 143.8 | 7.60e-42 | 100.0% | 11.5% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7febA03 | 3.40.50.12790 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › FHIPEP family, domain 4 | 0.65 | 30.0 | 3.56e-01 | 97.1% | 63.0% |
| 1xy7B00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.59 | 31.0 | 3.27e-01 | 83.3% | 55.7% |
| 1tjnA00 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 33.0 | 3.47e-01 | 94.9% | 61.6% |
| 1fo8A02 | 3.10.180.20 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › N-Acetylglucosaminyltransferase I, Domain 2 | 0.56 | 29.0 | 3.69e-01 | 87.0% | 85.0% |
| 1uz5A01 | 3.40.980.10 | Alpha Beta › 3-Layer(aba) Sandwich › Molybdenum Cofactor Biosythetic Enzyme; Chain A › MoaB/Mog-like domain | 0.54 | 29.0 | 2.75e-01 | 90.6% | 41.8% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4019933 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.64 | 31.0 | 2.67e-01 | 92.8% | 29.5% |
| 3681280 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.59 | 32.0 | 3.71e-01 | 86.2% | 72.0% |
| 3969104 | 211.1.1.1 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase | 0.57 | 30.0 | 4.00e-01 | 86.2% | 100.0% |
| 4033194 | 211.1.1.24 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Ble-like_N | 0.55 | 28.0 | 3.72e-01 | 84.1% | 100.0% |
| 3286632 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.55 | 29.0 | 3.82e-01 | 80.4% | 100.0% |
| 3967993 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.54 | 26.0 | 3.57e-01 | 84.1% | 100.0% |
| 5017349 | 7541.1.1.1 ↗ | a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth | 0.53 | 30.0 | 2.97e-01 | 90.6% | 49.0% |
| 4970369 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.52 | 28.0 | 3.69e-01 | 82.6% | 100.0% |
| 4032583 | 7541.1.1.1 ↗ | a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth | 0.51 | 29.0 | 2.78e-01 | 90.6% | 45.3% |
| 4992739 | 7541.1.1.1 ↗ | a/b three-layered sandwiches › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › Molybdenum cofactor biosynthesis proteins › MoCF_biosynth | 0.51 | 29.0 | 2.90e-01 | 90.6% | 50.7% |
D4
medium
residues 413-489
Domain cluster:
rep: major_capsid_protein__YP_009342387__Spheniscid_alphaherpesvirus_1__2560777__D413-487
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03122.21 best | Herpes_MCP | 66.1 | 2.20e-18 | 100.0% | 5.2% |
D5
medium
residues 599-736_1034-1104
Domain cluster:
rep: protein_UL86__YP_004933858__Cynomolgus_macaque_cytomegalovirus_strain_Ottawa__944969__D580-722_767-802
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03122.21 best | Herpes_MCP | 165.1 | 2.80e-48 | 66.5% | 10.4% |
| PF03122.21 | Herpes_MCP | 91.9 | 3.60e-26 | 37.8% | 5.3% |
D6
medium
residues 737-807_820-843_915-953
Domain cluster:
rep: major_capsid_protein__NP_042950__Human_betaherpesvirus_6A__32603__D700-745_769-795_865-895
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03122.21 best | Herpes_MCP | 48.8 | 3.70e-13 | 72.4% | 8.1% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ywmA01 | 2.60.500.10 | Mainly Beta › Sandwich › Surface Active Protein fold › Surface Active Protein domain | 0.50 | 35.0 | 4.05e-01 | 98.5% | 99.0% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7655 | 4066.1.1.1 ↗ | a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP | 0.93 | 90.0 | 5.69e-01 | 100.0% | 39.5% |
| 1779568 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 22.0 | 3.45e-01 | 78.4% | 86.3% |
D7
medium
residues 968-1019
Domain cluster:
representative
D8
medium
residues 1105-1176
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03122.21 best | Herpes_MCP | 64.5 | 6.40e-18 | 100.0% | 5.0% |