major_capsid_protein

Euk-Vir

Equus_caballus_papillomavirus_1

major_capsid_protein__NP_620513__Equus_caballus_papillomavirus_1__333920

Identity

84.0 mean pLDDT

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Zetapapillomavirus› Equus_caballus_papillomavirus_1

TaxID: 333920

View cluster (154 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 17-67_85-113_310-334_372-415_449-476

PDB

Domain cluster: rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463

Pfam (4)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	89.4	3.40e-25	45.8%	19.1%
PF00500.25	Late_protein_L1	53.9	2.00e-14	27.1%	9.0%
PF00500.25	Late_protein_L1	32.1	7.80e-08	16.4%	5.2%
PF00500.25	Late_protein_L1	33.0	4.20e-08	14.7%	5.0%

D2 medium residues 68-84_114-133_152-177_190-271_335-371

PDB

Domain cluster: rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	174.4	5.90e-51	70.9%	31.0%
PF00500.25	Late_protein_L1	29.3	5.50e-07	20.9%	7.4%

D3 medium residues 134-151_272-309

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	29.4	5.30e-07	82.1%	8.1%