major_capsid_protein

Euk-Vir

Macacine_alphaherpesvirus_1

major_capsid_protein__NP_851878__Macacine_alphaherpesvirus_1__10325

Identity

74.0 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Macacine_alphaherpesvirus_1

TaxID: 10325

View cluster (34 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 21-190_313-340

PDB

D2 medium residues 195-262

PDB

Domain cluster: rep: major_capsid_protein__YP_009342387__Spheniscid_alphaherpesvirus_1__2560777__D202-266

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	39.9	1.70e-10	100.0%	4.7%

D3 medium residues 263-312_360-397

PDB

Domain cluster: rep: major_capsid_protein__NP_065524__Alcelaphine_gammaherpesvirus_1__35252__D265-300_361-395

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	47.8	7.50e-13	60.2%	3.7%
PF03122.21	Herpes_MCP	33.1	2.00e-08	44.3%	2.6%

D4 medium residues 398-443_728-791_810-829_904-988_1049-1060_1118-1158_1177-1215_1242-1277_1328-1377

PDB

Domain cluster: rep: BcLF1__YP_010084688__Lymphocryptovirus_Macaca_pfe-lcl-E3__1716044__D401-481_1041-1052_1179-1363

Pfam (5)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	57.4	8.80e-16	24.2%	7.3%
PF03122.21	Herpes_MCP	36.6	1.70e-09	22.1%	5.2%
PF03122.21	Herpes_MCP	31.6	5.60e-08	21.9%	7.8%
PF03122.21	Herpes_MCP	39.2	2.90e-10	12.7%	3.4%
PF03122.21	Herpes_MCP	44.1	9.10e-12	10.2%	2.7%

D5 medium residues 444-575_710-727_792-809_989-1048

PDB

Domain cluster: rep: major_capsid_protein__YP_053088__Equid_alphaherpesvirus_1__10326__D462-592_974-1044

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	62.9	2.00e-17	60.5%	8.5%
PF03122.21	Herpes_MCP	57.0	1.20e-15	39.0%	4.2%

D6 medium residues 830-903

PDB

Domain cluster: rep: major_capsid_protein__YP_002333524__Equid_alphaherpesvirus_9__55744__D829-899

D7 medium residues 1216-1241_1278-1327

PDB