major_capsid_protein

Euk-Vir

Gallid_alphaherpesvirus_2

major_capsid_protein__YP_001033947__Gallid_alphaherpesvirus_2__10390

Identity

71.6 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Gallid_alphaherpesvirus_2

TaxID: 10390

View cluster (34 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 247-317_372-412

PDB

Domain cluster: rep: major_capsid_protein__NP_065524__Alcelaphine_gammaherpesvirus_1__35252__D265-300_361-395

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	61.9	4.10e-17	66.1%	5.2%
PF03122.21	Herpes_MCP	36.3	2.20e-09	37.5%	2.9%

D2 medium residues 413-444_1123-1148_1200-1252_1323-1393

PDB

D3 medium residues 529-603

PDB

Domain cluster: rep: UL86__YP_009137462__Papio_ursinus_cytomegalovirus__1667587__D507-577

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	55.9	2.60e-15	98.7%	4.7%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7655	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.89	67.0	3.90e-01	100.0%	10.9%

D4 medium residues 748-851_917-1020

PDB

Domain cluster: rep: major_capsid_protein__YP_164461__Cercopithecine_alphaherpesvirus_2__10317__D733-805_827-1003

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	73.3	1.50e-20	51.9%	8.1%
PF03122.21	Herpes_MCP	69.5	2.00e-19	51.0%	8.1%

D5 medium residues 1253-1322

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	82.9	1.80e-23	100.0%	4.9%