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major_capsid_protein

Euk-Vir

Equid_alphaherpesvirus_9

major_capsid_protein__YP_002333524__Equid_alphaherpesvirus_9__55744

Identity

Accession:: YP_002333524 ↗
Protein ID:: major_capsid_protein
Kingdom:: euk

Quality

74.1 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Equid_alphaherpesvirus_9

TaxID: 55744

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 231-307_358-408_1051-1122

PDB

Domain cluster: representative

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	67.6	7.50e-19	39.5%	5.5%
PF03122.21	Herpes_MCP	95.8	2.30e-27	36.5%	5.4%
PF03122.21	Herpes_MCP	56.3	1.90e-15	26.5%	3.6%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4972327	4312.1.1.0 ↗	a+b two layers › RelE-like › RelE-like › RelE-like	0.53	22.0	3.05e-01	97.5%	74.7%
3942790	4312.1.1.0 ↗	a+b two layers › RelE-like › RelE-like › RelE-like	0.53	16.0	3.02e-01	97.0%	89.2%
3228161	319.1.1.0 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones	0.50	22.0	2.82e-01	91.5%	67.0%

D2 medium residues 469-562

PDB

Domain cluster: rep: major_capsid_protein__YP_009046515__Falconid_herpesvirus_1__1510155__D483-586

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	50.5	1.10e-13	97.9%	5.8%

D3 medium residues 602-729

PDB

Domain cluster: rep: major_capsid_protein__NP_040163__Human_alphaherpesvirus_3__10335__D619-726

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	169.9	9.90e-50	100.0%	9.4%

D4 medium residues 829-899

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	29.9	1.80e-07	100.0%	5.0%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1hbkA00	1.20.80.10	Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein ›	0.58	45.0	4.20e-01	94.4%	66.3%
1a41A02	1.20.120.380	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2	0.50	41.0	3.78e-01	93.0%	90.4%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7655	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.93	88.0	5.08e-01	100.0%	13.1%
3955867	148.1.3.251 ↗	alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF30647	0.67	37.0	3.78e-01	94.4%	54.3%
3343995	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.53	38.0	2.79e-01	98.6%	27.9%
3413505	197.1.1.1 ↗	alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › FERM_M	0.52	43.0	3.72e-01	94.4%	71.3%
4218568	101.1.1.463 ↗	alpha arrays › HTH › HTH › Three-helical HTH › PF31175	0.50	38.0	4.00e-01	84.5%	95.4%

D5 medium residues 900-1001

PDB

Domain cluster: rep: major_capsid_protein__YP_009342387__Spheniscid_alphaherpesvirus_1__2560777__D918-949_964-1013

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	71.0	7.20e-20	100.0%	7.8%

D6 medium residues 1184-1338

PDB