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major_capsid_protein

Euk-Vir

Erinaceus_europaeus_papillomavirus_1

major_capsid_protein__YP_002427696__Erinaceus_europaeus_papillomavirus_1__445217

Identity

Accession:: YP_002427696 ↗
Protein ID:: major_capsid_protein
Kingdom:: euk

Quality

83.1 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Zurhausenvirales› Papillomaviridae› Dyoetapapillomavirus› Erinaceus_europaeus_papillomavirus_1

TaxID: 445217

Cluster

View cluster (154 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 73-111_308-329_374-413_459-480

PDB

Domain cluster: rep: unnamed_protein_product__YP_004895386__Canis_familiaris_papillomavirus_10__1087109__D20-62_366-406_443-470

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	49.5	4.20e-13	35.0%	8.2%
PF00500.25	Late_protein_L1	58.1	1.10e-15	32.5%	7.8%
PF00500.25	Late_protein_L1	34.9	1.10e-08	19.5%	4.6%

D2 medium residues 112-139_209-225_288-307

PDB

Domain cluster: rep: L1__YP_009345082__Eidolon_helvum_papillomavirus_2__1335476__D106-161_251-269_292-310

D3 medium residues 140-169_186-208_226-259_330-342

PDB

Domain cluster: rep: L1__YP_009508760__Peromyscus_papillomavirus_1__1074206__D104-118_156-168_236-258_310-344

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00500.25 best	Late_protein_L1	102.9	2.80e-29	88.0%	23.9%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1dzlA00	2.60.175.20	Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus	0.99	97.0	5.97e-01	100.0%	43.1%
3s7vC00	2.60.175.10	Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus	0.65	61.0	4.38e-01	100.0%	71.6%
6lsvA01	2.60.120.330	Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain	0.56	42.0	3.01e-01	83.0%	38.5%
5c3pD00	2.60.120.330	Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain	0.54	40.0	2.95e-01	82.0%	47.5%
2wzpP03	2.60.120.880	Mainly Beta › Sandwich › Jelly Rolls ›	0.52	37.0	3.42e-01	74.0%	78.7%
8h68A01	2.60.120.590	Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like	0.52	38.0	3.03e-01	79.0%	49.1%
1upsB01	2.60.120.200	Mainly Beta › Sandwich › Jelly Rolls ›	0.51	38.0	2.93e-01	81.0%	95.1%
7fh5A01	2.60.120.330	Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain	0.50	38.0	2.87e-01	82.0%	40.9%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2806413	10.2.1.4 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1	1.00	98.0	5.98e-01	100.0%	42.5%
2707156	10.2.1.4 ↗	beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Late_protein_L1	1.00	98.0	5.96e-01	100.0%	40.6%
3301989	10.12.1.16 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy	0.57	44.0	3.20e-01	83.0%	42.8%
3720434	10.12.1.39 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2	0.56	36.0	2.99e-01	76.0%	34.6%
3723066	10.12.1.39 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2	0.54	35.0	2.87e-01	76.0%	33.7%
3181596	10.12.1.17 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N	0.53	41.0	2.86e-01	82.0%	35.9%
3370274	10.12.1.17 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy,DIOX_N	0.53	41.0	3.03e-01	83.0%	38.4%
3309790	10.12.1.16 ↗	beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy	0.52	40.0	2.96e-01	85.0%	40.3%
3236043	10.4.1.9 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2	0.52	34.0	3.30e-01	78.0%	57.4%
4945546	10.7.1.0 ↗	beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070	0.51	35.0	3.49e-01	78.0%	66.7%
3394866	10.1.1.17 ↗	beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2	0.50	35.0	2.79e-01	74.0%	70.7%
3223111	11.2.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain	0.50	35.0	3.58e-01	74.0%	92.0%