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major_capsid_protein

Euk-Vir

Ostreococcus_tauri_virus_2

major_capsid_protein__YP_004063490__Ostreococcus_tauri_virus_2__696472

Identity

Accession:
YP_004063490 ↗
Protein ID:
major_capsid_protein
Kingdom:
euk

Quality

75.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 36-201
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16903.13 best Capsid_N 43.0 5.60e-11 81.9% 64.2%
D2 high residues 204-361
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04451.18 best Capsid_NCLDV 45.0 1.40e-11 98.1% 57.6%
CATH (61)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vvfA02 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.81 59.0 6.51e-01 100.0% 91.4%
1hx6A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.77 58.0 6.11e-01 100.0% 87.2%
5tipA02 2.70.9.20 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Major capsid protein Vp54 0.75 71.0 6.34e-01 100.0% 89.8%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.71 58.0 6.17e-01 100.0% 95.7%
1df0A03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.62 49.0 5.33e-01 100.0% 98.5%
4devD01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 45.0 5.02e-01 100.0% 96.8%
4mzuF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 34.0 3.57e-01 100.0% 60.1%
3at0A02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 49.0 4.80e-01 100.0% 83.9%
4h3wA01 2.60.290.20 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › Protein of unknown function (DUF4621), C-terminal domain 0.57 43.0 4.80e-01 94.9% 100.0%
4kq7A01 2.60.120.1390 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 0.57 47.0 4.75e-01 100.0% 87.0%
4mbrA02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 47.0 4.67e-01 100.0% 83.1%
8bvoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 28.0 3.62e-01 94.9% 82.6%
3lsoA03 2.60.40.2260 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 46.0 4.68e-01 97.5% 88.0%
4oumA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.56 43.0 4.68e-01 100.0% 97.0%
3cwzB03 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.56 31.0 3.48e-01 78.5% 67.8%
2j1vA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 45.0 4.75e-01 100.0% 96.5%
4j25F00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.55 34.0 3.26e-01 100.0% 50.3%
4zelB01 2.60.120.310 Mainly Beta › Sandwich › Jelly Rolls › Copper type II, ascorbate-dependent monooxygenase, N-terminal domain 0.54 44.0 4.60e-01 99.4% 94.4%
3kt7A01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.54 37.0 3.23e-01 100.0% 43.9%
5y4mA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 47.0 4.86e-01 100.0% 98.0%
3zn6A01 2.60.120.1170 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 4.47e-01 100.0% 95.5%
3dgtA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 49.0 4.09e-01 100.0% 96.4%
3gneB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 49.0 4.24e-01 99.4% 99.6%
2orzA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 47.0 4.84e-01 100.0% 96.8%
7chkB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 4.44e-01 97.5% 96.2%
1mkfA01 2.60.40.1330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 48.0 4.46e-01 100.0% 77.9%
2y26A01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 48.0 3.71e-01 99.4% 45.0%
5hbaA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 4.46e-01 100.0% 97.0%
5h4cB00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 4.38e-01 99.4% 94.8%
2og5A00 3.60.130.10 Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like 0.53 38.0 3.06e-01 72.8% 86.7%
5mqcC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 49.0 4.11e-01 100.0% 69.6%
3napB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 49.0 4.17e-01 100.0% 64.4%
2ls6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 40.0 4.02e-01 88.6% 76.8%
2yfuA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 43.0 4.56e-01 100.0% 97.9%
1b35C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 48.0 3.99e-01 100.0% 64.5%
2kd7A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 45.0 4.58e-01 99.4% 91.8%
5z06A01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.52 47.0 4.62e-01 98.7% 100.0%
1auyB00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 45.0 4.25e-01 100.0% 77.8%
1k12A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 45.0 4.57e-01 100.0% 93.0%
1tme200 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 48.0 4.06e-01 100.0% 76.5%
4msvA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 4.51e-01 98.7% 99.3%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 47.0 4.05e-01 100.0% 63.1%
5aooC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 47.0 4.24e-01 100.0% 73.6%
4qpiC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 47.0 4.07e-01 100.0% 72.0%
3ammA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.52 46.0 3.91e-01 96.2% 94.1%
3vbhC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 47.0 4.09e-01 100.0% 73.1%
3unpA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 47.0 4.45e-01 100.0% 85.5%
3hnmA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 47.0 4.66e-01 100.0% 93.4%
1fx5B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 4.04e-01 98.7% 98.7%
4nhxA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.52 35.0 3.15e-01 100.0% 47.7%
2ws9201 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 47.0 4.40e-01 100.0% 83.1%
3vgiA00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.51 45.0 3.78e-01 95.6% 89.6%
1oh4A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 47.0 4.58e-01 100.0% 94.8%
4ozxA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.70e-01 95.6% 97.2%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 4.03e-01 96.8% 100.0%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 4.56e-01 100.0% 96.8%
3w9aA00 2.60.120.1160 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 4.02e-01 100.0% 94.1%
5ewnA01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 4.42e-01 100.0% 94.0%
7k7jA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 46.0 4.51e-01 99.4% 100.0%
1tg7A04 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 43.0 4.25e-01 100.0% 86.5%
1opoC01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 45.0 4.48e-01 100.0% 93.9%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
184943 10.2.1.80 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › P2_C 0.81 59.0 6.51e-01 100.0% 91.4%
4863942 10.2.1.41 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_NCLDV 0.79 71.0 6.97e-01 100.0% 88.6%
4850053 10.2.1.41 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_NCLDV 0.78 57.0 6.46e-01 81.6% 96.7%
274267 10.2.1.87 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › P3_C 0.77 58.0 5.95e-01 100.0% 81.5%
1186 10.2.1.41 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_NCLDV 0.76 72.0 6.36e-01 100.0% 89.4%
2995199 10.2.1.41 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_NCLDV 0.75 72.0 6.69e-01 100.0% 87.8%
1546392 10.2.1.66 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › STIV-like_capsid 0.74 59.0 5.70e-01 100.0% 74.3%
2497009 10.2.1.41 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_NCLDV 0.72 67.0 6.21e-01 100.0% 88.8%
3580755 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.71 61.0 6.32e-01 100.0% 96.0%
4850055 10.2.1.41 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_NCLDV 0.71 63.0 6.27e-01 93.0% 90.7%
5042047 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.68 61.0 6.22e-01 100.0% 97.4%
5039150 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 47.0 5.36e-01 100.0% 95.7%
5047113 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 47.0 5.40e-01 100.0% 96.5%
2389248 10.2.1.63 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › MCP_V20_C 0.65 60.0 5.25e-01 100.0% 79.6%
3607218 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 49.0 4.65e-01 100.0% 68.6%
3172079 10.32.1.243 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29992 0.63 45.0 5.06e-01 100.0% 97.5%
3593920 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.63 45.0 5.06e-01 100.0% 97.5%
4243265 10.32.1.4 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L 0.61 41.0 4.16e-01 96.2% 67.5%
3477591 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 48.0 4.97e-01 97.5% 91.3%
3238578 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.58 37.0 4.32e-01 98.1% 90.9%
5018133 10.1.2.186 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › DUF3344 0.58 48.0 3.84e-01 100.0% 46.4%
5051003 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 39.0 4.59e-01 100.0% 99.1%
3825418 10.32.1.192 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › C-JID 0.57 41.0 4.18e-01 98.1% 74.2%
3278330 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.57 29.0 3.33e-01 91.1% 64.3%
4574158 10.3.1.2 beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.57 45.0 4.73e-01 100.0% 94.3%
3480988 10.2.1.18 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Cu2_monooxygen 0.56 46.0 4.89e-01 100.0% 97.9%
3661896 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 41.0 4.28e-01 100.0% 82.1%
3498200 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.76e-01 98.1% 89.4%
3364460 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.56 47.0 4.94e-01 99.4% 97.2%
4954387 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.56 49.0 4.76e-01 96.2% 87.8%
4029586 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.56 49.0 5.02e-01 100.0% 98.7%
3179028 10.32.1.2 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.56 51.0 5.03e-01 99.4% 100.0%
3259823 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 49.0 4.62e-01 100.0% 79.5%
4011054 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 42.0 4.67e-01 93.0% 100.0%
3492761 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 51.0 4.91e-01 100.0% 90.3%
3582182 10.12.1.54 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy_4 0.55 36.0 3.40e-01 100.0% 53.7%
3242376 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.54 39.0 4.21e-01 97.5% 89.2%
4426314 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 46.0 4.84e-01 99.4% 100.0%
3466690 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 49.0 4.40e-01 100.0% 84.7%
3389203 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.53 39.0 4.05e-01 98.1% 82.8%
2862065 10.2.1.15 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Tymo_coat 0.52 45.0 4.36e-01 100.0% 84.6%
3782815 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 43.0 4.28e-01 100.0% 85.5%
3420779 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.52 47.0 4.75e-01 100.0% 97.5%
2440135 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.52 47.0 4.17e-01 100.0% 76.9%
3588938 10.2.1.89 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PF28589 0.51 47.0 4.60e-01 100.0% 94.1%
3620780 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.51 46.0 4.41e-01 98.1% 96.8%
3914225 10.32.1.283 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TGFb_propeptide 0.51 38.0 4.11e-01 91.8% 92.6%
3506640 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 3.89e-01 100.0% 86.9%
3476147 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 45.0 3.76e-01 98.1% 91.4%
3333290 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.51 47.0 4.53e-01 100.0% 97.2%
3493644 10.32.1.203 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Seipin 0.51 46.0 4.62e-01 100.0% 97.6%
4133217 10.1.1.55 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PL28 0.50 44.0 3.73e-01 96.2% 86.4%