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major_capsid_protein
Euk-VirHuman_papillomavirus_140
major_capsid_protein__YP_006393308__Human_papillomavirus_140__1070413
Identity
- Accession:
- YP_006393308 ↗
- Protein ID:
- major_capsid_protein
- Kingdom:
- euk
Quality
81.7
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Gammapapillomavirus›
Human_papillomavirus_140
TaxID: 1070413
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 25-114_322-426_462-491
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 144.5 | 6.70e-42 | 48.4% | 20.5% |
| PF00500.25 | Late_protein_L1 | 141.3 | 6.30e-41 | 40.4% | 17.7% |
| PF00500.25 | Late_protein_L1 | 32.0 | 8.50e-08 | 14.7% | 6.0% |
D2
high
residues 121-150_167-242_263-311
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 117.5 | 1.00e-33 | 76.8% | 24.3% |