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major_capsid_protein
Euk-VirFalconid_herpesvirus_1
major_capsid_protein__YP_009046515__Falconid_herpesvirus_1__1510155
Identity
- Accession:
- YP_009046515 ↗
- Protein ID:
- major_capsid_protein
- Kingdom:
- euk
Quality
75.9
mean pLDDT
Taxonomy
Heunggongvirae›
Peploviricota›
Herviviricetes›
Herpesvirales›
Orthoherpesviridae›
Mardivirus›
Falconid_herpesvirus_1
TaxID: 1510155
Cluster
View cluster (34 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 483-586
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03122.21 best | Herpes_MCP | 49.5 | 2.30e-13 | 100.0% | 6.2% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7655 | 4066.1.1.1 ↗ | a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP | 0.91 | 68.0 | 4.15e-01 | 93.3% | 14.8% |
| 4994628 | 328.9.1.0 ↗ | a+b two layers › IF3-like › SepF C-terminal domain › SepF C-terminal domain | 0.51 | 28.0 | 2.96e-01 | 87.5% | 56.7% |
D2
medium
residues 269-336_367-401
Domain cluster:
rep: major_capsid_protein__NP_065524__Alcelaphine_gammaherpesvirus_1__35252__D265-300_361-395
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03122.21 best | Herpes_MCP | 76.4 | 1.70e-21 | 68.0% | 5.0% |
| PF03122.21 | Herpes_MCP | 31.3 | 6.70e-08 | 34.9% | 2.4% |
D3
medium
residues 804-839_946-1036
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03122.21 best | Herpes_MCP | 70.3 | 1.20e-19 | 73.2% | 7.0% |
| PF03122.21 | Herpes_MCP | 43.3 | 1.70e-11 | 29.9% | 2.7% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7655 | 4066.1.1.1 ↗ | a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP | 0.96 | 93.0 | 5.84e-01 | 100.0% | 42.6% |
| 3691312 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.52 | 28.0 | 2.84e-01 | 83.5% | 50.4% |
D4
medium
residues 840-910
Domain cluster:
rep: major_capsid_protein__YP_002333524__Equid_alphaherpesvirus_9__55744__D829-899
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03122.21 best | Herpes_MCP | 32.2 | 3.60e-08 | 100.0% | 5.1% |
D5
medium
residues 1207-1304_1325-1340
Domain cluster:
rep: major_capsid_protein__NP_065524__Alcelaphine_gammaherpesvirus_1__35252__D1180-1286_1299-1321
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03122.21 best | Herpes_MCP | 144.5 | 4.70e-42 | 100.0% | 7.6% |