major_capsid_protein

Euk-Vir

Elephant_endotheliotropic_herpesvirus_5

major_capsid_protein__YP_009051992__Elephant_endotheliotropic_herpesvirus_5__768738

Identity

71.7 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Proboscivirus› Elephant_endotheliotropic_herpesvirus_5

TaxID: 768738

View cluster (34 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 55-184

PDB

D2 medium residues 462-557

PDB

Domain cluster: rep: Cy118__YP_009337526__Cynomolgus_cytomegalovirus__1919083__D473-550

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	48.7	4.00e-13	100.0%	6.7%

D3 medium residues 704-805_870-1011

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	148.5	2.80e-43	59.8%	10.9%
PF03122.21	Herpes_MCP	68.3	4.70e-19	41.8%	8.6%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2116543	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.90	88.0	6.74e-01	100.0%	64.7%
7655	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.83	81.0	5.97e-01	100.0%	60.0%
2738095	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.82	79.0	6.06e-01	100.0%	66.1%

D4 medium residues 806-869

PDB

Domain cluster: representative

D5 medium residues 1030-1088

PDB

D6 medium residues 1165-1260

PDB

Domain cluster: rep: major_capsid_protein__NP_065524__Alcelaphine_gammaherpesvirus_1__35252__D1180-1286_1299-1321

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	133.4	1.10e-38	100.0%	6.9%