←Back to structures

major_capsid_protein

Euk-Vir

Human_alphaherpesvirus_2

major_capsid_protein__YP_009137170__Human_alphaherpesvirus_2__10310

Identity

Accession:: YP_009137170 ↗
Protein ID:: major_capsid_protein
Kingdom:: euk

Quality

71.0 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Human_alphaherpesvirus_2

TaxID: 10310

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 174-258

PDB

Domain cluster: rep: major_capsid_protein__YP_009342387__Spheniscid_alphaherpesvirus_1__2560777__D202-266

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	76.1	2.00e-21	100.0%	6.1%

D2 medium residues 259-305_362-396

PDB

Domain cluster: rep: major_capsid_protein__NP_065524__Alcelaphine_gammaherpesvirus_1__35252__D265-300_361-395

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	35.4	3.90e-09	58.5%	3.5%
PF03122.21	Herpes_MCP	30.5	1.20e-07	45.1%	2.5%

D3 medium residues 397-480_509-556_1030-1058_1120-1165_1182-1201_1332-1374

PDB

Domain cluster: rep: rh118__YP_068211__Macacine_betaherpesvirus_3__47929__D388-508_990-1015_1074-1164_1294-1343

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	59.7	1.90e-16	35.6%	6.1%
PF03122.21	Herpes_MCP	30.1	1.60e-07	15.9%	3.0%
PF03122.21	Herpes_MCP	38.1	6.00e-10	13.0%	2.2%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3240098	4184.1.1.0 ↗	beta barrels › MFPT repeat › MFPT repeat › MFPT repeat	0.53	20.0	3.19e-01	93.7%	88.9%

D4 medium residues 557-579_710-738_976-1029

PDB

Domain cluster: representative

D5 medium residues 616-709_812-853_873-897

PDB

Domain cluster: rep: protein_UL86__YP_004933858__Cynomolgus_macaque_cytomegalovirus_strain_Ottawa__944969__D580-722_767-802

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	111.5	4.20e-32	58.4%	6.9%
PF03122.21	Herpes_MCP	39.0	3.20e-10	44.1%	3.5%

D6 medium residues 739-811_898-936

PDB

Domain cluster: rep: major_capsid_protein__NP_042950__Human_betaherpesvirus_6A__32603__D700-745_769-795_865-895

D7 medium residues 1059-1119

PDB

D8 medium residues 1202-1331

PDB