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major_capsid_protein
Euk-VirSalmon_gill_poxvirus
major_capsid_protein__YP_009162470__Salmon_gill_poxvirus__1680908
Identity
- Accession:
- YP_009162470 ↗
- Protein ID:
- major_capsid_protein
- Kingdom:
- euk
Quality
63.4
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Salmonpoxvirus›
Salmon_gill_poxvirus
TaxID: 1680908
Cluster
View cluster (35 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-239
D2
high
residues 290-451
Domain cluster:
rep: rifampicin_resistance_protein__YP_009001666__Anomala_cuprea_entomopoxvirus__62099__D266-416
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03340.20 best | Pox_Rif | 91.4 | 6.90e-26 | 100.0% | 28.8% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ku7A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 27.0 | 2.88e-01 | 93.8% | 54.3% |
| 2dnzA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.50 | 27.0 | 3.28e-01 | 91.4% | 83.9% |
ECOD (1)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 185528 | 3298.1.1.1 ↗ | a+b complex topology › Insertion domain in vaccinia virus scaffolding protein D13 › Insertion domain in vaccinia virus scaffolding protein D13 › Insertion domain in vaccinia virus scaffolding protein D13 › Pox_Rif | 0.91 | 82.0 | 8.51e-01 | 96.9% | 100.0% |
D3
high
residues 467-587