major_capsid_protein

Euk-Vir

Columbid_alphaherpesvirus_1

major_capsid_protein__YP_009352925__Columbid_alphaherpesvirus_1__93386

Identity

72.7 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Mardivirus› Columbid_alphaherpesvirus_1

TaxID: 93386

View cluster (34 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 59-91_128-195

PDB

D2 medium residues 269-314_367-405_1111-1129

PDB

Domain cluster: rep: major_capsid_protein__NP_065524__Alcelaphine_gammaherpesvirus_1__35252__D265-300_361-395

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	39.0	3.30e-10	45.2%	3.3%
PF03122.21	Herpes_MCP	38.6	4.40e-10	41.3%	2.8%

D3 medium residues 457-580_1038-1056

PDB

Domain cluster: rep: major_capsid_protein__YP_009176919__Testudinid_alphaherpesvirus_3__2560801__D457-483_518-581_1018-1044

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	74.4	7.00e-21	83.9%	8.8%

D4 medium residues 630-703

PDB

Domain cluster: rep: major_capsid_protein__YP_009137093__Human_alphaherpesvirus_1__10298__D619-683

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	103.3	1.30e-29	100.0%	5.5%

D5 medium residues 834-908

PDB

Domain cluster: rep: major_capsid_protein__YP_002333524__Equid_alphaherpesvirus_9__55744__D829-899

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	46.5	1.80e-12	100.0%	5.3%