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major_capsid_protein
Euk-VirSus_scrofa_papillomavirus_2
major_capsid_protein__YP_009408615__Sus_scrofa_papillomavirus_2__2025338
Identity
- Accession:
- YP_009408615 ↗
- Protein ID:
- major_capsid_protein
- Kingdom:
- euk
Quality
84.9
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Zurhausenvirales›
Papillomaviridae›
Sus_scrofa_papillomavirus_2
TaxID: 2025338
Cluster
View cluster (154 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 117-172_185-301
Domain cluster:
rep: late_protein_L1__NP_077122__Alphapapillomavirus_4__337043__D129-185_198-277_298-367
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 237.8 | 3.50e-70 | 100.0% | 36.2% |
D2
medium
residues 13-66_79-98_308-329_372-413_465-481
Domain cluster:
rep: L1_capsid_protein__YP_009272579__Bos_taurus_papillomavirus_13__1887213__D32-107_305-401_440-463
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 89.7 | 2.80e-25 | 49.0% | 17.3% |
| PF00500.25 | Late_protein_L1 | 50.8 | 1.80e-13 | 28.4% | 8.5% |
| PF00500.25 | Late_protein_L1 | 35.4 | 8.10e-09 | 15.5% | 4.4% |
D3
medium
residues 67-78_99-114_330-371_454-464
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00500.25 best | Late_protein_L1 | 44.3 | 1.60e-11 | 61.7% | 9.3% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1dzlA00 | 2.60.175.20 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Major capsid L1 (late) superfamily, Papillomavirus | 0.96 | 93.0 | 5.55e-01 | 100.0% | 85.9% |