major_capsid_protein

Euk-Vir

Cervid_alphaherpesvirus_3

major_capsid_protein__YP_010087584__Cervid_alphaherpesvirus_3__2115790

Identity

72.8 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Cervid_alphaherpesvirus_3

TaxID: 2115790

View cluster (34 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 405-480_1062-1074_1136-1174_1193-1343

PDB

Domain cluster: rep: BcLF1__YP_010084688__Lymphocryptovirus_Macaca_pfe-lcl-E3__1716044__D401-481_1041-1052_1179-1363

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	238.3	2.40e-70	71.3%	15.8%
PF03122.21	Herpes_MCP	67.0	1.20e-18	28.7%	5.3%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2d7vB00	3.30.300.20	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain	0.57	19.0	2.59e-01	75.3%	51.6%

D2 medium residues 22-187

PDB

D3 medium residues 188-257

PDB

Domain cluster: rep: major_capsid_protein__YP_009342387__Spheniscid_alphaherpesvirus_1__2560777__D202-266

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	46.7	1.50e-12	100.0%	4.9%

D4 medium residues 258-303_368-404_1075-1135

PDB

Domain cluster: rep: major_capsid_protein__YP_002333524__Equid_alphaherpesvirus_9__55744__D231-307_358-408_1051-1122

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	67.0	1.10e-18	43.8%	4.6%
PF03122.21	Herpes_MCP	36.0	2.70e-09	31.9%	2.7%

D5 medium residues 500-545_561-571

PDB

Domain cluster: representative

D6 medium residues 733-798_913-964_998-1016

PDB

Domain cluster: rep: major_capsid_protein__NP_042950__Human_betaherpesvirus_6A__32603__D700-745_769-795_865-895

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	41.0	8.10e-11	57.7%	4.6%