←Back to structures
major_capsid_protein
Euk-VirLymphocystis_disease_virus_4
major_capsid_protein__YP_010087895__Lymphocystis_disease_virus_4__2704413
Identity
- Accession:
- YP_010087895 ↗
- Protein ID:
- major_capsid_protein
- Kingdom:
- euk
Quality
84.7
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Megaviricetes›
Pimascovirales›
Iridoviridae›
Lymphocystivirus›
Lymphocystis_disease_virus_4
TaxID: 2704413
Cluster
View cluster (126 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 46-264
Domain cluster:
rep: OQ709206.1__WGH20694.1__SEA_SCOUPSA_14__00014__D13-196
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16903.13 best | Capsid_N | 119.0 | 3.00e-34 | 93.2% | 87.9% |
CATH (68)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5tipA01 | 2.70.9.10 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 | 0.92 | 76.0 | 8.27e-01 | 99.1% | 98.9% |
| 2vvfA01 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.75 | 48.0 | 6.00e-01 | 99.5% | 100.0% |
| 1hx6B01 | 2.70.9.30 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Viral coat protein p3 | 0.72 | 66.0 | 6.44e-01 | 97.3% | 89.7% |
| 4aw7A03 | 2.60.120.1200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.70 | 41.0 | 5.23e-01 | 95.0% | 100.0% |
| 1qr4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 26.0 | 4.00e-01 | 91.8% | 83.9% |
| 3b83C00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 27.0 | 3.92e-01 | 92.2% | 77.8% |
| 4a5wA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 32.0 | 4.53e-01 | 91.8% | 92.4% |
| 1dhxA03 | 3.90.249.10 | Alpha Beta › Alpha-Beta Complex › Hexon Major Viral Coat Protein; domain 3 › Hexon Major Viral Coat Protein, domain 3 | 0.67 | 58.0 | 5.54e-01 | 92.2% | 83.9% |
| 3t1wA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 27.0 | 3.94e-01 | 91.8% | 83.7% |
| 2rttA00 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.67 | 31.0 | 4.39e-01 | 90.0% | 91.4% |
| 3tesA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 26.0 | 3.87e-01 | 92.2% | 81.9% |
| 2ekjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 26.0 | 3.66e-01 | 93.2% | 75.2% |
| 1g0dA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 27.0 | 3.99e-01 | 91.3% | 87.6% |
| 1pgsA01 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.63 | 39.0 | 4.90e-01 | 92.7% | 99.3% |
| 4w6yA00 | 2.60.120.1210 | Mainly Beta › Sandwich › Jelly Rolls › | 0.62 | 38.0 | 4.47e-01 | 91.3% | 87.0% |
| 2n1kA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 26.0 | 3.63e-01 | 83.6% | 78.3% |
| 6lebA02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 37.0 | 4.55e-01 | 90.4% | 93.5% |
| 2vr3B02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 39.0 | 4.56e-01 | 93.6% | 89.0% |
| 2f1eA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.61 | 33.0 | 4.29e-01 | 84.0% | 94.8% |
| 1g87A02 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.61 | 41.0 | 4.72e-01 | 90.9% | 93.1% |
| 3kptA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 36.0 | 4.34e-01 | 92.2% | 89.4% |
| 2q3zA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 28.0 | 4.15e-01 | 86.3% | 100.0% |
| 1xvsA00 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.60 | 32.0 | 4.17e-01 | 84.0% | 91.1% |
| 1r17A02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 38.0 | 4.41e-01 | 93.2% | 86.7% |
| 1od3A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.60 | 35.0 | 4.37e-01 | 92.2% | 94.7% |
| 2okmA00 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 36.0 | 4.30e-01 | 91.3% | 88.4% |
| 2y7lA02 | 2.60.40.2430 | Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain | 0.60 | 34.0 | 4.01e-01 | 91.3% | 79.5% |
| 4b60A02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 37.0 | 4.34e-01 | 92.7% | 86.5% |
| 3v10A02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 35.0 | 4.17e-01 | 91.3% | 86.3% |
| 1ayoA00 | 2.60.40.690 | Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain | 0.59 | 33.0 | 4.16e-01 | 90.0% | 90.8% |
| 1gnyA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 41.0 | 4.77e-01 | 94.1% | 100.0% |
| 6sl4A00 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.59 | 38.0 | 4.49e-01 | 91.8% | 94.0% |
| 2q1mA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 32.0 | 4.26e-01 | 89.0% | 99.1% |
| 2xbzA00 | 2.60.40.2380 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.59 | 34.0 | 4.36e-01 | 89.5% | 95.5% |
| 5f7uA06 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.59 | 34.0 | 4.40e-01 | 92.2% | 99.2% |
| 2je8A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 29.0 | 3.95e-01 | 84.0% | 93.6% |
| 3at0A02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 38.0 | 4.33e-01 | 94.1% | 85.7% |
| 2x9zA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 37.0 | 4.42e-01 | 91.3% | 94.0% |
| 4bhuA00 | 2.60.40.3490 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 32.0 | 3.99e-01 | 94.5% | 89.1% |
| 1l9nA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 31.0 | 4.06e-01 | 85.8% | 96.5% |
| 7ehgC01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.57 | 34.0 | 4.34e-01 | 92.2% | 100.0% |
| 2f68X02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 36.0 | 4.05e-01 | 90.4% | 82.1% |
| 7rskA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 29.0 | 3.93e-01 | 84.0% | 96.3% |
| 2dmhA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.56 | 36.0 | 4.36e-01 | 93.2% | 97.9% |
| 2pn5A07 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 29.0 | 3.88e-01 | 84.0% | 96.2% |
| 3cvzB01 | 3.30.1490.290 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Low molecular weight S-layer protein, domain 1 | 0.56 | 27.0 | 3.84e-01 | 87.2% | 98.0% |
| 3lsoA03 | 2.60.40.2260 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 36.0 | 4.22e-01 | 91.8% | 89.9% |
| 7u7nA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 27.0 | 3.73e-01 | 84.0% | 96.9% |
| 8h68A01 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.55 | 30.0 | 3.02e-01 | 96.8% | 49.1% |
| 3d3aA03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 33.0 | 4.05e-01 | 91.8% | 94.0% |
| 1gwmA00 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.55 | 34.0 | 4.00e-01 | 93.2% | 87.6% |
| 5hccB03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 30.0 | 3.82e-01 | 84.5% | 92.6% |
| 3pf2A01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 39.0 | 4.30e-01 | 91.8% | 90.9% |
| 1uwwB00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.55 | 41.0 | 4.45e-01 | 90.9% | 93.3% |
| 7nitA06 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 41.0 | 4.64e-01 | 94.1% | 100.0% |
| 3butA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 31.0 | 4.00e-01 | 91.3% | 97.6% |
| 2hr0B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 28.0 | 3.85e-01 | 90.4% | 100.0% |
| 2e26A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 37.0 | 4.28e-01 | 92.7% | 98.1% |
| 8dkuA02 | 2.70.50.60 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › abc- transporter (atp binding component) like domain | 0.53 | 32.0 | 3.81e-01 | 95.4% | 86.4% |
| 4gwmA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 38.0 | 4.39e-01 | 90.9% | 98.2% |
| 2nq3A00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.52 | 32.0 | 3.96e-01 | 82.2% | 99.2% |
| 1jv2A04 | 2.60.40.1530 | Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 4 | 0.52 | 38.0 | 4.11e-01 | 94.5% | 87.2% |
| 7eehA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.51 | 30.0 | 2.95e-01 | 96.8% | 49.0% |
| 4aqsA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 46.0 | 4.50e-01 | 96.3% | 97.1% |
| 1xo8A00 | 2.60.40.1820 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 32.0 | 3.69e-01 | 93.6% | 86.8% |
| 1t4wA00 | 2.60.40.720 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 38.0 | 3.97e-01 | 90.9% | 84.7% |
| 1r17B01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 36.0 | 4.15e-01 | 97.7% | 99.4% |
| 3l4cA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.50 | 37.0 | 4.09e-01 | 76.3% | 100.0% |
ECOD (63)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2995054 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.91 | 76.0 | 7.64e-01 | 98.6% | 85.3% |
| 2995198 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.91 | 72.0 | 7.79e-01 | 98.6% | 93.7% |
| 4850052 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.89 | 77.0 | 7.99e-01 | 99.5% | 95.1% |
| 4830370 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.89 | 73.0 | 7.12e-01 | 84.0% | 84.0% |
| 2389747 | 10.2.1.33 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Pox_Rif | 0.85 | 72.0 | 7.28e-01 | 97.7% | 87.2% |
| 4883559 | 10.2.1.33 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Pox_Rif | 0.84 | 68.0 | 6.98e-01 | 94.5% | 86.2% |
| 2497010 | 10.2.1.54 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Capsid_N | 0.81 | 77.0 | 7.63e-01 | 98.6% | 97.3% |
| 5042047 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.80 | 56.0 | 6.57e-01 | 94.1% | 100.0% |
| 3580756 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.76 | 64.0 | 6.70e-01 | 100.0% | 96.0% |
| 184942 | 10.2.1.56 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › P2_N | 0.75 | 48.0 | 6.00e-01 | 99.5% | 100.0% |
| 3242830 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.75 | 70.0 | 7.01e-01 | 98.6% | 96.9% |
| 1546389 | 10.2.1.61 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Sputnik_MCP_1st | 0.73 | 66.0 | 6.06e-01 | 95.4% | 88.9% |
| 3884004 | 11.1.1.1016 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30511 | 0.71 | 30.0 | 4.24e-01 | 92.2% | 81.0% |
| 3273274 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.69 | 65.0 | 6.51e-01 | 99.5% | 98.2% |
| 5047633 | 10.1.2.183 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC | 0.69 | 35.0 | 4.89e-01 | 95.0% | 100.0% |
| 3886025 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.69 | 27.0 | 4.02e-01 | 92.2% | 83.3% |
| 2389249 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.68 | 62.0 | 5.70e-01 | 97.3% | 88.1% |
| 1088523 | 11.1.1.231 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BslA | 0.68 | 35.0 | 4.53e-01 | 90.9% | 86.4% |
| 3886029 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.67 | 26.0 | 3.76e-01 | 92.2% | 75.0% |
| 5044738 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.67 | 30.0 | 4.19e-01 | 95.4% | 83.6% |
| 5034847 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 32.0 | 4.27e-01 | 90.9% | 85.2% |
| 3886825 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.65 | 25.0 | 3.82e-01 | 93.6% | 83.3% |
| 3938345 | 11.1.1.909 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Gpi16 | 0.65 | 30.0 | 3.73e-01 | 91.3% | 67.9% |
| 5036667 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 30.0 | 4.15e-01 | 90.0% | 90.5% |
| 1178821 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.63 | 37.0 | 4.51e-01 | 93.2% | 89.4% |
| 4954925 | 11.1.1.1064 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27409 | 0.62 | 30.0 | 4.27e-01 | 95.4% | 96.2% |
| 3781908 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.62 | 37.0 | 4.73e-01 | 91.8% | 100.0% |
| 3489835 | 11.1.5.94 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 | 0.62 | 39.0 | 4.25e-01 | 93.6% | 74.1% |
| 5055609 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 26.0 | 4.05e-01 | 90.9% | 100.0% |
| 4090707 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.61 | 35.0 | 4.28e-01 | 95.4% | 88.1% |
| 4021474 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.61 | 42.0 | 4.98e-01 | 92.2% | 100.0% |
| 4033062 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 29.0 | 3.99e-01 | 89.5% | 89.9% |
| 4273934 | 11.1.5.25 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › ChiC | 0.60 | 38.0 | 4.55e-01 | 93.2% | 92.7% |
| 4960366 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 30.0 | 4.16e-01 | 84.0% | 98.1% |
| 4959986 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 30.0 | 4.05e-01 | 84.0% | 93.6% |
| 4968130 | 11.1.1.1424 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7490 | 0.59 | 29.0 | 3.99e-01 | 84.0% | 93.3% |
| 1147 | 10.32.1.15 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_15 | 0.59 | 41.0 | 4.77e-01 | 94.1% | 100.0% |
| 3856744 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 28.0 | 3.81e-01 | 86.8% | 88.2% |
| 3787513 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.58 | 32.0 | 4.25e-01 | 88.1% | 100.0% |
| 4238325 | 11.1.1.17 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_C | 0.58 | 31.0 | 4.12e-01 | 85.8% | 96.5% |
| 3282439 | 11.1.1.461 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF6299 | 0.58 | 27.0 | 3.73e-01 | 91.3% | 86.4% |
| 1579 | 11.1.1.17 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_C | 0.58 | 28.0 | 3.91e-01 | 85.8% | 96.0% |
| 3942277 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.58 | 39.0 | 4.62e-01 | 93.2% | 100.0% |
| 5040532 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 33.0 | 4.04e-01 | 86.8% | 88.9% |
| 5041590 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 28.0 | 3.85e-01 | 81.3% | 94.3% |
| 3236411 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.57 | 30.0 | 3.47e-01 | 93.2% | 69.0% |
| 3534419 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.56 | 26.0 | 3.73e-01 | 93.6% | 94.0% |
| 4018970 | 10.2.1.95 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › DUF4360 | 0.56 | 45.0 | 4.87e-01 | 97.3% | 100.0% |
| 4161767 | 10.32.1.271 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27237 | 0.55 | 38.0 | 4.46e-01 | 90.0% | 100.0% |
| 4962172 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 39.0 | 4.34e-01 | 95.0% | 91.7% |
| 4981222 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 32.0 | 4.00e-01 | 83.1% | 93.8% |
| 3933691 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.54 | 33.0 | 3.94e-01 | 94.1% | 90.3% |
| 5004553 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.54 | 42.0 | 4.60e-01 | 91.3% | 100.0% |
| 3872655 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 27.0 | 2.12e-01 | 93.6% | 22.9% |
| 1688024 | 11.1.5.38 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › SdrG_C_C | 0.53 | 36.0 | 3.96e-01 | 92.2% | 82.2% |
| 3929545 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 32.0 | 3.80e-01 | 90.9% | 88.6% |
| 3978174 | 11.1.1.78 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BIg21 | 0.52 | 34.0 | 3.95e-01 | 86.3% | 93.3% |
| 3407484 | 11.1.1.536 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 | 0.52 | 36.0 | 4.16e-01 | 90.4% | 100.0% |
| 3852619 | 5095.1.1.0 ↗ | beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen | 0.51 | 35.0 | 3.71e-01 | 90.4% | 78.4% |
| 4030378 | 5095.1.1.1 ↗ | beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › PA14 | 0.51 | 33.0 | 3.74e-01 | 90.9% | 86.9% |
| 3947830 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 38.0 | 4.10e-01 | 89.5% | 91.4% |
| 3920761 | 11.2.1.43 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2+FerI | 0.51 | 31.0 | 3.56e-01 | 79.9% | 80.6% |
| 5006324 | 10.1.2.201 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PF27237 | 0.51 | 37.0 | 4.22e-01 | 89.5% | 100.0% |
D2
high
residues 265-444
Domain cluster:
rep: putative_capsid_protein_4__YP_003969808__Cafeteria_roenbergensis_virus_BV-PW1__693272__D326-494
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04451.18 best | Capsid_NCLDV | 195.7 | 9.90e-58 | 100.0% | 89.3% |