←Back to structures

major_capsid_protein

Euk-Vir

Frog_virus_3

major_capsid_protein__YP_031669__Frog_virus_3__10493

Identity

Accession:: YP_031669 ↗
Protein ID:: major_capsid_protein
Kingdom:: euk

Quality

78.6 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Megaviricetes› Pimascovirales› Iridoviridae› Ranavirus› Frog_virus_3

TaxID: 10493

Cluster

View cluster (126 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 275-322_340-450

PDB

Domain cluster: rep: putative_capsid_protein_4__YP_003969808__Cafeteria_roenbergensis_virus_BV-PW1__693272__D326-494

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF04451.18 best	Capsid_NCLDV	176.3	8.70e-52	100.0%	87.8%

D2 medium residues 46-85_109-162_178-213_243-274

PDB

Domain cluster: rep: OQ709206.1__WGH20694.1__SEA_SCOUPSA_14__00014__D13-196

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF16903.13 best	Capsid_N	77.3	1.80e-21	76.5%	53.1%

D3 medium residues 86-108_163-177_214-242

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4fw1A02	2.30.30.10	Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral	0.60	39.0	4.25e-01	88.1%	83.3%
1b7tA02	2.30.30.360	Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal	0.56	37.0	4.07e-01	91.0%	88.5%
5mw5A01	2.60.40.3510	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.56	46.0	3.71e-01	100.0%	88.1%
4m4zA01	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.55	37.0	4.09e-01	88.1%	100.0%
2ckkA01	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.54	37.0	4.02e-01	89.6%	92.5%
1qypA00	2.20.25.10	Mainly Beta › Single Sheet › N-terminal domain of TfIIb ›	0.53	34.0	3.62e-01	91.0%	77.2%
2v5mA02	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	43.0	3.80e-01	98.5%	76.9%
2v1qA00	2.30.30.40	Mainly Beta › Roll › SH3 type barrels. › SH3 Domains	0.51	37.0	3.91e-01	88.1%	90.0%

ECOD (18)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3228278	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.55	38.0	3.93e-01	92.5%	76.9%
1140051	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.55	37.0	4.05e-01	88.1%	95.9%
3313119	4.1.1.42 ↗	beta barrels › SH3 › SH3 › SH3 › Agenet	0.54	38.0	3.62e-01	92.5%	62.5%
3256498	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.53	38.0	4.11e-01	92.5%	94.5%
3967552	375.1.1.71 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF2387	0.53	34.0	3.95e-01	98.5%	100.0%
5009592	10.17.1.1 ↗	beta sandwiches › jelly-roll › Acetamidase/Formamidase-like › Acetamidase/Formamidase-like › FmdA_AmdA	0.52	44.0	3.15e-01	100.0%	63.9%
3612152	223.1.1.0 ↗	a+b three layers › Profilin-like › sensor domains › sensor domains	0.52	36.0	2.84e-01	76.1%	87.3%
3788538	4.1.1.12 ↗	beta barrels › SH3 › SH3 › SH3 › PWWP	0.51	42.0	3.47e-01	94.0%	51.5%
3635008	4.1.1.12 ↗	beta barrels › SH3 › SH3 › SH3 › PWWP	0.51	42.0	3.30e-01	92.5%	55.3%
3672445	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.51	38.0	3.05e-01	94.0%	37.9%
3612090	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.51	38.0	4.00e-01	91.0%	93.3%
3237859	4.1.1.0 ↗	beta barrels › SH3 › SH3 › SH3	0.51	36.0	3.83e-01	92.5%	94.5%
3170397	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.50	37.0	3.53e-01	88.1%	66.3%
5035450	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.50	32.0	2.92e-01	88.1%	46.3%
3505220	1.1.13.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins	0.50	43.0	3.34e-01	94.0%	93.1%
4003123	4.1.1.1 ↗	beta barrels › SH3 › SH3 › SH3 › SH3_1	0.50	36.0	3.70e-01	88.1%	81.5%
3938453	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.50	44.0	3.77e-01	100.0%	70.9%
2392267	2004.1.1.55 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase	0.50	41.0	2.94e-01	91.0%	81.1%