major_capsid_protein

Euk-Vir

Equid_alphaherpesvirus_1

major_capsid_protein__YP_053088__Equid_alphaherpesvirus_1__10326

Identity

72.0 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Varicellovirus› Equid_alphaherpesvirus_1

TaxID: 10326

View cluster (34 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 18-80_156-189

PDB

D2 medium residues 190-260_1104-1117

PDB

Domain cluster: rep: major_capsid_protein__YP_009342387__Spheniscid_alphaherpesvirus_1__2560777__D202-266

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	59.0	2.90e-16	95.3%	5.1%

D3 medium residues 261-305_344-396

PDB

Domain cluster: rep: major_capsid_protein__NP_065524__Alcelaphine_gammaherpesvirus_1__35252__D265-300_361-395

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	40.4	1.30e-10	54.1%	3.6%
PF03122.21	Herpes_MCP	36.4	2.00e-09	50.0%	3.2%

D4 medium residues 462-592_974-1044

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	92.8	1.90e-26	71.3%	8.9%
PF03122.21	Herpes_MCP	43.0	2.10e-11	35.1%	5.5%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4a55A01	3.10.20.770	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.53	27.0	2.40e-01	93.1%	29.7%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7655	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.87	76.0	5.30e-01	89.6%	99.8%

D5 medium residues 593-715

PDB

Domain cluster: rep: major_capsid_protein__NP_040163__Human_alphaherpesvirus_3__10335__D619-726

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	158.6	2.70e-46	100.0%	9.2%

D6 medium residues 833-903

PDB

Domain cluster: rep: major_capsid_protein__YP_002333524__Equid_alphaherpesvirus_9__55744__D829-899

D7 medium residues 1204-1336

PDB