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major_capsid_protein

Euk-Vir

Human_betaherpesvirus_7

major_capsid_protein__YP_073799__Human_betaherpesvirus_7__10372

Identity

Accession:: YP_073799 ↗
Protein ID:: major_capsid_protein
Kingdom:: euk

Quality

72.1 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Roseolovirus› Human_betaherpesvirus_7

TaxID: 10372

Cluster

View cluster (34 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-101_126-188

PDB

D2 medium residues 102-125_1039-1071

PDB

D3 medium residues 228-309_374-390

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	78.2	4.70e-22	83.8%	6.0%

D4 medium residues 391-452_996-1038_1072-1163

PDB

Domain cluster: rep: major_capsid_protein__NP_050238__Human_betaherpesvirus_6B__32604__D389-450_1004-1021_1081-1128_1145-1167

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	109.8	1.40e-31	47.2%	6.7%
PF03122.21	Herpes_MCP	72.1	3.40e-20	33.0%	4.7%
PF03122.21	Herpes_MCP	50.6	1.00e-13	23.4%	3.2%

D5 medium residues 475-495_718-799_865-902_981-995

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	59.0	3.00e-16	63.5%	7.4%

D6 medium residues 567-717

PDB

Domain cluster: rep: protein_UL86__YP_004933858__Cynomolgus_macaque_cytomegalovirus_strain_Ottawa__944969__D580-722_767-802

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	170.7	5.90e-50	100.0%	11.2%

D7 medium residues 903-980

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	78.3	4.50e-22	98.7%	5.4%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4wjmA00	3.40.1190.20	Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase	0.55	47.0	3.22e-01	100.0%	45.8%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2116543	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.95	90.0	5.33e-01	100.0%	16.2%

D8 medium residues 1164-1299

PDB

Domain cluster: rep: major_capsid_protein__NP_065524__Alcelaphine_gammaherpesvirus_1__35252__D1180-1286_1299-1321

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	196.8	7.70e-58	100.0%	10.0%