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major_capsid_protein

Euk-Vir

Cercopithecine_alphaherpesvirus_2

major_capsid_protein__YP_164461__Cercopithecine_alphaherpesvirus_2__10317

Identity

Accession:: YP_164461 ↗
Protein ID:: major_capsid_protein
Kingdom:: euk

Quality

72.7 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Simplexvirus› Cercopithecine_alphaherpesvirus_2

TaxID: 10317

Cluster

View cluster (34 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 476-582

PDB

Domain cluster: rep: major_capsid_protein__YP_009046515__Falconid_herpesvirus_1__1510155__D483-586

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	42.7	2.40e-11	100.0%	6.5%

D2 medium residues 23-191_309-338

PDB

D3 medium residues 589-732_806-826_1004-1046

PDB

Domain cluster: rep: protein_UL86__YP_004933858__Cynomolgus_macaque_cytomegalovirus_strain_Ottawa__944969__D580-722_767-802

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	152.6	1.70e-44	70.2%	11.0%
PF03122.21	Herpes_MCP	36.8	1.50e-09	21.1%	3.1%

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3vprA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.54	31.0	3.62e-01	92.3%	77.9%
3ccyA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.51	30.0	3.46e-01	87.0%	78.2%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7655	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.99	98.0	6.83e-01	100.0%	83.9%
2116543	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.93	90.0	6.59e-01	100.0%	92.7%
3194936	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.58	43.0	3.83e-01	76.0%	66.9%
3588708	4336.1.1.1 ↗	alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF	0.51	25.0	3.50e-01	94.7%	96.0%

D4 medium residues 733-805_827-1003

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	87.5	7.40e-25	73.2%	12.9%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7655	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.92	90.0	6.70e-01	100.0%	49.4%
3477153	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.53	19.0	3.24e-01	74.0%	95.3%

D5 medium residues 1214-1273

PDB

D6 medium residues 1274-1329

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	51.3	6.20e-14	100.0%	4.2%

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1r89A02	3.30.460.10	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2	0.60	45.0	3.42e-01	80.4%	74.2%
8iprA01	1.20.1560.10	Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain	0.60	52.0	3.30e-01	100.0%	39.9%
1zboA02	1.10.4060.10	Mainly Alpha › Orthogonal Bundle › LON domain-like fold › BPP1347 like domain	0.57	42.0	3.74e-01	98.2%	53.6%
1gs0A01	1.20.142.10	Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain	0.55	47.0	3.67e-01	100.0%	51.9%
2ganA01	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.53	36.0	2.60e-01	73.2%	27.1%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3993837	2004.1.1.1 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA	0.64	52.0	3.32e-01	91.1%	61.1%
3381337	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.62	51.0	3.21e-01	91.1%	18.0%
3483981	633.1.1.0 ↗	alpha bundles › Bromodomain-like › Bromodomain › Bromodomain	0.58	47.0	3.94e-01	100.0%	97.4%