←Back to structures

major_capsid_protein

Euk-Vir

Gallid_alphaherpesvirus_1

major_capsid_protein__YP_182376__Gallid_alphaherpesvirus_1__10386

Identity

Accession:: YP_182376 ↗
Protein ID:: major_capsid_protein
Kingdom:: euk

Quality

70.9 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Iltovirus› Gallid_alphaherpesvirus_1

TaxID: 10386

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 52-96_131-197

PDB

D2 medium residues 198-260

PDB

Domain cluster: rep: major_capsid_protein__NP_944420__Psittacid_alphaherpesvirus_1__50294__D205-256

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	46.3	2.00e-12	100.0%	4.5%

D3 medium residues 261-314_364-431_1076-1129

PDB

Domain cluster: rep: major_capsid_protein__YP_002333524__Equid_alphaherpesvirus_9__55744__D231-307_358-408_1051-1122

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	76.6	1.50e-21	38.6%	4.4%
PF03122.21	Herpes_MCP	52.5	2.70e-14	34.1%	4.1%
PF03122.21	Herpes_MCP	34.4	8.00e-09	33.0%	4.1%

D4 medium residues 432-461_1059-1075_1130-1146_1353-1367_1380-1399

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2pstX00	3.90.820.10	Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id	0.53	31.0	3.65e-01	96.0%	91.8%
4pofA03	2.20.28.10	Mainly Beta › Single Sheet › Rubrerythrin, domain 2 ›	0.52	27.0	3.51e-01	74.7%	98.0%
4gr5C01	3.90.820.10	Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id	0.51	29.0	3.43e-01	91.9%	85.9%
6m3aA01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.50	30.0	3.54e-01	81.8%	89.4%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3622913	375.4.1.1 ↗	few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like › Nop10p	0.57	24.0	2.30e-01	73.7%	30.4%
3432172	375.1.1.0 ↗	few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related	0.51	28.0	3.55e-01	74.7%	100.0%

D5 medium residues 462-488_1032-1058_1147-1179

PDB

Domain cluster: representative

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3568352	110.1.1.1 ↗	alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death	0.52	28.0	2.70e-01	95.4%	44.0%

D6 medium residues 489-598_1007-1031

PDB

Domain cluster: rep: major_capsid_protein__YP_009046515__Falconid_herpesvirus_1__1510155__D483-586

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	59.9	1.60e-16	99.3%	7.5%

D7 medium residues 599-641_666-750_767-800_817-835

PDB

Domain cluster: rep: protein_UL86__YP_004933858__Cynomolgus_macaque_cytomegalovirus_strain_Ottawa__944969__D580-722_767-802

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	94.5	5.70e-27	65.8%	8.8%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1fadA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.51	20.0	2.61e-01	88.4%	61.1%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7655	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.96	94.0	6.33e-01	100.0%	43.5%

D8 medium residues 1215-1352

PDB

Domain cluster: rep: major_capsid_protein__NP_065524__Alcelaphine_gammaherpesvirus_1__35252__D1180-1286_1299-1321

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	183.8	6.50e-54	100.0%	10.0%