major_capsid_protein

Euk-Vir

Human_gammaherpesvirus_4

major_capsid_protein__YP_401697__Human_gammaherpesvirus_4__10376

Identity

74.4 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Lymphocryptovirus› human_gammaherpesvirus_4

TaxID: 10376

View cluster (34 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 568-1036

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	535.2	5.70e-160	100.0%	34.8%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1gnlA01	1.20.1270.20	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.57	14.0	2.68e-01	90.0%	67.6%
3lsjA02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.54	18.0	3.08e-01	93.0%	84.3%
4od4A01	1.10.357.140	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › UbiA prenyltransferase	0.53	19.0	3.23e-01	97.2%	92.3%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2738095	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.94	92.0	9.02e-01	100.0%	94.0%
2116543	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.91	86.0	8.56e-01	100.0%	94.0%
7655	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.88	85.0	8.02e-01	100.0%	85.2%

D2 medium residues 404-454_1331-1377

PDB

D3 medium residues 455-479_1149-1186

PDB