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major_coat_protein_VP2
Euk-Viradeno-associated_virus_2
major_coat_protein_VP2__YP_680427__adeno-associated_virus_2__10804
Identity
- Accession:
- YP_680427 ↗
- Protein ID:
- major_coat_protein_VP2
- Kingdom:
- euk
Quality
74.5
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Quintoviricetes›
Piccovirales›
Parvoviridae›
Dependoparvovirus›
adeno-associated_virus_2
TaxID: 10804
Cluster
View cluster (92 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 136-270_362-397_470-553
Domain cluster:
rep: VP2__YP_009508801__Miniopterus_schreibersii_bat_bocavirus__1911554__D51-253_470-529
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00740.24 best | VP1_2 | 223.5 | 6.60e-66 | 54.1% | 28.2% |
| PF00740.24 | VP1_2 | 104.7 | 6.50e-30 | 34.1% | 14.3% |
| PF00740.24 | VP1_2 | 28.4 | 8.80e-07 | 15.3% | 7.0% |
D2
medium
residues 271-361
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00740.24 best | VP1_2 | 137.3 | 8.70e-40 | 100.0% | 17.1% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g8gA00 | 2.170.30.10 | Mainly Beta › Beta Complex › Empty Capsid Viral Protein 2 › Parvovirus coat protein VP1/VP2 | 0.72 | 65.0 | 4.03e-01 | 100.0% | 19.7% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2644354 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.78 | 70.0 | 4.31e-01 | 100.0% | 18.4% |
| 3107916 | 10.2.1.9 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Parvo_coat | 0.75 | 53.0 | 3.68e-01 | 86.8% | 22.6% |
| 3458496 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.56 | 38.0 | 2.63e-01 | 71.4% | 32.6% |
| 4015820 | 149.1.1.0 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 | 0.53 | 36.0 | 2.35e-01 | 70.3% | 57.4% |
| 3280179 | 2004.1.1.552 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T4SS-DNA_transf, TraG-D_C | 0.51 | 40.0 | 2.58e-01 | 84.6% | 32.4% |