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major_coat_protein

Euk-Vir

Blackberry_vein_banding-associated_virus

major_coat_protein__YP_008411015__Blackberry_vein_banding-associated_virus__1381464

Identity

Accession:
YP_008411015 ↗
Protein ID:
major_coat_protein
Kingdom:
euk

Quality

67.6 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Closteroviridae› Ampelovirus› Blackberry_vein_banding-associated_virus

TaxID: 1381464

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 138-224
PDB
Domain cluster: rep: putative_coat_protein__YP_009241370__Grapevine_leafroll-associated_virus_13__1815581__D122-218
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6igmG01 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.62 51.0 5.33e-01 89.7% 100.0%
5lohA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 42.0 3.44e-01 87.4% 85.8%
4cgyA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.53 39.0 3.11e-01 78.2% 57.9%
3pg1A02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 43.0 3.26e-01 88.5% 83.5%
2wtvA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 42.0 3.42e-01 87.4% 92.9%
3ug9A02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.53 39.0 2.87e-01 78.2% 75.6%
4y93A03 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 41.0 3.37e-01 88.5% 91.6%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.52 45.0 3.77e-01 97.7% 98.1%
3rp9A02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 41.0 3.12e-01 87.4% 90.2%
1twfA05 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.51 42.0 3.56e-01 92.0% 77.1%
2wnhA00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.51 39.0 2.58e-01 83.9% 36.1%
4ru1A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.51 40.0 3.44e-01 88.5% 85.8%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 42.0 3.61e-01 92.0% 83.3%
8carA01 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.50 38.0 2.52e-01 80.5% 36.1%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4890977 2484.1.1.2 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.63 55.0 4.00e-01 100.0% 58.7%
4980638 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.58 43.0 3.62e-01 97.7% 46.0%
5055554 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.58 51.0 3.57e-01 100.0% 77.2%
4365571 149.1.1.1 ↗ alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.57 48.0 3.08e-01 98.9% 62.9%
3716134 7575.1.1.0 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like 0.56 38.0 2.72e-01 70.1% 67.3%
3250585 109.4.1.791 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 0.55 37.0 2.32e-01 70.1% 20.2%
3387169 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.55 40.0 3.04e-01 78.2% 95.0%
4017648 109.4.1.1970 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ECM29_N, ARM_ECM29_C, HEAT_ECM29 0.54 40.0 2.22e-01 78.2% 11.0%
3594246 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 40.0 2.38e-01 81.6% 23.7%
3599612 7060.1.1.1 ↗ alpha arrays › ELMO domain › ELMO domain › ELMO domain › ELMO_CED12 0.53 38.0 2.96e-01 77.0% 66.2%
3257866 4967.1.1.0 ↗ alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases 0.52 39.0 3.03e-01 81.6% 86.2%
3680018 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 37.0 2.65e-01 74.7% 35.1%
3271233 109.4.1.791 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 0.52 38.0 2.56e-01 79.3% 53.3%
3777935 5054.1.1.59 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, Ion_trans_2 0.51 42.0 2.99e-01 92.0% 27.6%
3250588 109.4.1.791 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 0.51 32.0 3.19e-01 72.4% 57.9%
3592874 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.50 45.0 4.16e-01 100.0% 93.6%
3781542 109.4.1.62 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Nic96 0.50 42.0 2.49e-01 94.3% 39.7%
3271981 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 35.0 2.90e-01 72.4% 40.0%
D2 medium residues 225-290
PDB
Domain cluster: rep: putative_coat_protein__YP_009241370__Grapevine_leafroll-associated_virus_13__1815581__D219-283