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major_coat_protein
Euk-VirSaccharomyces_kudriavzevii_virus_L-A1
major_coat_protein__YP_009328932__Saccharomyces_kudriavzevii_virus_L-A1__1921825
Identity
- Accession:
- YP_009328932 ↗
- Protein ID:
- major_coat_protein
- Kingdom:
- euk
Quality
62.6
mean pLDDT
Taxonomy
Orthornavirae›
Duplornaviricota›
Chrymotiviricetes›
Ghabrivirales›
Orthototiviridae›
Saccharomyces_kudriavzevii_virus_L-A1
TaxID: 1921825
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 486-592
D2
medium
residues 1-65
D3
medium
residues 66-140_334-357
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09220.17 best | LA-virus_coat | 92.0 | 3.80e-26 | 75.8% | 16.9% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m1cA00 | 3.90.1840.10 | Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein | 0.87 | 82.0 | 4.83e-01 | 100.0% | 44.9% |
| 1dqeA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.51 | 38.0 | 3.45e-01 | 78.8% | 67.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7654 | 4065.1.1.1 ↗ | a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related › LA-virus_coat | 0.87 | 82.0 | 4.83e-01 | 100.0% | 44.9% |
| 4821589 | 4065.1.1.1 ↗ | a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related › LA-virus_coat | 0.76 | 71.0 | 4.59e-01 | 100.0% | 68.3% |
| 5066348 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.59 | 35.0 | 3.91e-01 | 85.9% | 73.8% |
| 3405108 | 108.2.1.1 ↗ | alpha arrays › EF-hand › Insect pheromone/odorant-binding proteins › Insect pheromone/odorant-binding proteins › PBP_GOBP | 0.53 | 39.0 | 3.51e-01 | 74.7% | 63.8% |
D4
medium
residues 141-163_304-333_420-471
D5
medium
residues 164-303
Domain cluster:
rep: putative_coat_protein__YP_009551936__Panax_notoginseng_virus_B__2248770__D173-269_329-347
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09220.17 best | LA-virus_coat | 172.3 | 1.60e-50 | 99.3% | 30.8% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1m1cA00 | 3.90.1840.10 | Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein | 0.96 | 94.0 | 5.76e-01 | 100.0% | 21.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7654 | 4065.1.1.1 ↗ | a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related › LA-virus_coat | 0.96 | 94.0 | 5.76e-01 | 100.0% | 21.7% |
| 4821589 | 4065.1.1.1 ↗ | a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related › LA-virus_coat | 0.75 | 71.0 | 4.94e-01 | 100.0% | 36.4% |
| 3735533 | 4065.1.1.0 ↗ | a+b complex topology › L-A virus major coat protein-related › L-A virus major coat protein-related › L-A virus major coat protein-related | 0.68 | 63.0 | 4.41e-01 | 100.0% | 57.4% |
D6
medium
residues 358-419