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major_coat_protein
Euk-VirBlackcurrant_leafroll-associated_virus_1
major_coat_protein__YP_009552061__Blackcurrant_leafroll-associated_virus_1__2292426
Identity
- Accession:
- YP_009552061 ↗
- Protein ID:
- major_coat_protein
- Kingdom:
- euk
Quality
78.6
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Alsuviricetes›
Martellivirales›
Closteroviridae›
Closterovirus›
Blackcurrant_leafroll-associated_virus_1
TaxID: 2292426
Cluster
View cluster (33 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 32-141
Domain cluster:
rep: CP__YP_009162627__Tobacco_virus_1__1692045__D32-141
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01785.23 best | Closter_coat | 52.6 | 5.00e-14 | 100.0% | 52.9% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.69 | 33.0 | 4.55e-01 | 90.9% | 91.1% |
| 3s64A00 | 1.10.225.10 | Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like | 0.64 | 35.0 | 4.07e-01 | 90.0% | 74.1% |
| 2h4oA00 | 6.20.120.10 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.63 | 33.0 | 4.16e-01 | 97.3% | 88.7% |
| 6wshA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 31.0 | 4.13e-01 | 72.7% | 96.4% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 32.0 | 4.21e-01 | 72.7% | 100.0% |
| 2a6hF01 | 1.20.120.1810 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 38.0 | 3.32e-01 | 99.1% | 45.4% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.53 | 44.0 | 4.09e-01 | 90.9% | 95.0% |
| 3df8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 44.0 | 4.42e-01 | 97.3% | 89.9% |
| 1b5fB00 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.51 | 28.0 | 3.12e-01 | 97.3% | 66.7% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4978170 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.65 | 53.0 | 4.41e-01 | 90.0% | 90.5% |
| 4183868 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.55 | 36.0 | 4.18e-01 | 78.2% | 94.9% |
| 3937387 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.54 | 33.0 | 3.24e-01 | 78.2% | 55.0% |
| 3474254 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.52 | 38.0 | 3.54e-01 | 97.3% | 62.2% |
D2
medium
residues 142-192
Domain cluster:
rep: CPm__YP_009553645__Blackcurrant-associated_closterovirus_1__2338394__D141-190
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01785.23 best | Closter_coat | 32.8 | 5.90e-08 | 100.0% | 23.8% |