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major_early-transcribed_protein_53
Euk-VirApocheima_cinerarium_nucleopolyhedrovirus
major_early-transcribed_protein_53__YP_006607876__Apocheima_cinerarium_nucleopolyhedrovirus__307461
Identity
- Accession:
- YP_006607876 ↗
- Protein ID:
- major_early-transcribed_protein_53
- Kingdom:
- euk
Quality
77.0
mean pLDDT
Taxonomy
Naldaviricetes›
Lefavirales›
Baculoviridae›
Alphabaculovirus›
Apocheima_cinerarium_nucleopolyhedrovirus
TaxID: 307461
Cluster
View cluster (44 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 36-158
Domain cluster:
rep: me53_protein__YP_007250543__Thysanoplusia_orichalcea_nucleopolyhedrovirus__101850__D109-237
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06061.17 best | Baculo_ME53 | 129.9 | 1.80e-37 | 100.0% | 39.4% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b7yD00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.55 | 34.0 | 3.81e-01 | 73.2% | 79.4% |
| 5i47B02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.53 | 26.0 | 3.25e-01 | 89.4% | 80.6% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3787741 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 35.0 | 4.76e-01 | 84.6% | 98.3% |
| 3275206 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.62 | 34.0 | 2.87e-01 | 76.4% | 32.0% |
| 3807153 | 221.1.1.88 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › CLU_N | 0.58 | 30.0 | 3.25e-01 | 90.2% | 57.0% |
| 3861392 | 109.4.1.805 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UNC-79 | 0.52 | 42.0 | 2.50e-01 | 87.8% | 12.4% |
| 3920804 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.52 | 30.0 | 3.81e-01 | 70.7% | 100.0% |
| 3558626 | 109.4.1.805 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UNC-79 | 0.51 | 41.0 | 3.01e-01 | 87.8% | 35.2% |
D2
high
residues 166-261
Domain cluster:
rep: me-53__YP_009186707__Sucra_jujuba_nucleopolyhedrovirus__1563660__D191-238_262-289
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06061.17 best | Baculo_ME53 | 77.7 | 1.40e-21 | 100.0% | 30.0% |
D3
high
residues 290-347
Domain cluster:
rep: ME53__YP_009182323__Diatraea_saccharalis_granulovirus__1675862__D239-309
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06061.17 best | Baculo_ME53 | 67.4 | 1.90e-18 | 100.0% | 17.0% |