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major_structural_protein_VP1
Euk-VirOtomops_polyomavirus_KY157
major_structural_protein_VP1__YP_007346983__Otomops_polyomavirus_KY157__2035999
Identity
- Accession:
- YP_007346983 ↗
- Protein ID:
- major_structural_protein_VP1
- Kingdom:
- euk
Quality
72.7
mean pLDDT
Taxonomy
Shotokuvirae›
Cossaviricota›
Papovaviricetes›
Sepolyvirales›
Polyomaviridae›
Alphapolyomavirus›
Otomops_polyomavirus_KY157
TaxID: 2035999
Cluster
View cluster (117 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 44-86_107-143_242-278_301-385
Domain cluster:
rep: VP1__YP_009325930__Betapolyomavirus_securanorvegicus__1919247__D30-309
Pfam (4)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00718.29 best | Polyoma_coat | 54.9 | 1.00e-14 | 22.3% | 13.2% |
| PF00718.29 | Polyoma_coat | 32.4 | 7.50e-08 | 21.3% | 12.8% |
| PF00718.29 | Polyoma_coat | 57.5 | 1.60e-15 | 20.3% | 13.2% |
| PF00718.29 | Polyoma_coat | 59.5 | 4.00e-16 | 19.3% | 13.2% |
D2
medium
residues 87-106_144-241_279-300
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00718.29 best | Polyoma_coat | 114.1 | 9.30e-33 | 71.4% | 30.1% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sidF00 | 2.60.175.10 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus | 0.96 | 94.0 | 6.62e-01 | 100.0% | 61.9% |
| 3s7vC00 | 2.60.175.10 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus | 0.83 | 80.0 | 6.19e-01 | 100.0% | 76.1% |
| 3d3aA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 32.0 | 2.97e-01 | 79.3% | 46.9% |
| 3am2A02 | 2.60.120.1050 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 33.0 | 3.57e-01 | 82.1% | 76.9% |
| 3fmgA02 | 2.60.120.800 | Mainly Beta › Sandwich › Jelly Rolls › Rotavirus outer-layer protein VP7, domain 2 | 0.51 | 29.0 | 3.46e-01 | 96.4% | 86.2% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 961478 | 10.2.1.6 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Polyoma_coat | 0.97 | 95.0 | 7.44e-01 | 100.0% | 82.2% |
| 2666438 | 10.2.1.6 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Polyoma_coat | 0.96 | 94.0 | 6.72e-01 | 100.0% | 64.4% |
| 423236 | 10.2.1.6 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Polyoma_coat | 0.83 | 80.0 | 6.21e-01 | 100.0% | 74.4% |
| 5013572 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.53 | 33.0 | 3.85e-01 | 86.4% | 88.0% |
| 5080709 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.52 | 30.0 | 3.71e-01 | 80.7% | 94.0% |