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matrix

Euk-Vir

Marco_virus

matrix__YP_009362113__Marco_virus__1158190

Identity

Accession:
YP_009362113 ↗
Protein ID:
matrix
Kingdom:
euk

Quality

75.7 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Hapavirus› Marco_virus

TaxID: 1158190

Cluster

View cluster (89 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 67-230
PDB
Domain cluster: rep: matrix__YP_010087311__Muir_Springs_virus__932700__D68-219
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06326.19 best Vesiculo_matrix 94.0 1.70e-26 100.0% 75.0%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w2sA00 3.10.460.20 Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 0.84 75.0 7.58e-01 100.0% 93.9%
1lg7A00 3.10.460.10 Alpha Beta › Roll › VSV matrix protein › VSV matrix protein 0.83 77.0 7.72e-01 100.0% 96.3%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.64 28.0 3.11e-01 71.3% 50.4%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 33.0 4.18e-01 72.6% 100.0%
5oyhD00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.57 41.0 3.93e-01 98.8% 65.4%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.55 41.0 3.85e-01 98.8% 64.0%
7e6gA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.54 39.0 4.09e-01 78.0% 81.2%
1azsA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.53 39.0 3.71e-01 78.7% 64.2%
1ybtB00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.52 34.0 3.41e-01 99.4% 61.6%
1f3vA00 3.30.70.680 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TRADD, N-terminal domain 0.52 44.0 4.51e-01 91.5% 96.2%
2wz1B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.52 39.0 3.74e-01 99.4% 65.8%
6yiiA02 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.52 40.0 3.76e-01 98.2% 64.1%
3r5gA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.52 39.0 3.76e-01 100.0% 66.7%
1hw7A01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.52 40.0 4.00e-01 82.3% 93.6%
2f1fA02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.52 26.0 3.56e-01 73.8% 100.0%
1wc1C00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.51 39.0 3.70e-01 79.3% 69.3%
1ab8A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.51 39.0 3.83e-01 98.2% 74.0%
2g47A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.50 37.0 3.30e-01 75.0% 80.9%
4dezA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.50 27.0 3.34e-01 75.0% 83.8%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
184954 845.1.1.0 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein 0.84 75.0 7.58e-01 100.0% 93.9%
2966642 845.1.1.2 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein › Vesiculo_matrix 0.84 80.0 7.57e-01 100.0% 86.8%
169957 845.1.1.0 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein 0.82 78.0 7.45e-01 100.0% 89.1%
4255187 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.69 30.0 3.64e-01 72.0% 60.9%
3322115 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.66 29.0 3.41e-01 72.0% 58.3%
3249540 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.66 28.0 3.38e-01 70.7% 59.1%
4316087 230.2.1.0 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C 0.58 29.0 3.36e-01 72.0% 65.8%
3247697 872.3.1.5 ↗ a+b two layers › Dodecin subunit-like › YbjQ-like › YbjQ-like › YbjQ_2 0.57 29.0 3.74e-01 99.4% 86.7%
3502031 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.55 40.0 2.81e-01 98.8% 22.7%
3992645 273.1.1.0 ↗ a+b three layers › PR-1-like › PR-1-like › PR-1-like 0.53 31.0 3.18e-01 92.7% 59.7%
None — 0.52 39.0 3.75e-01 99.4% 65.8%
3324733 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.52 37.0 3.66e-01 73.8% 99.4%
3301512 309.1.1.6 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C,Peptidase_M16_M 0.51 36.0 3.24e-01 73.2% 75.0%
2120642 304.48.1.4 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc 0.50 36.0 3.92e-01 99.4% 88.4%
4941817 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.50 33.0 3.90e-01 72.6% 99.1%