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matrix
Euk-VirOita_virus
matrix__YP_009362256__Oita_virus__1272953
Identity
- Accession:
- YP_009362256 ↗
- Protein ID:
- matrix
- Kingdom:
- euk
Quality
84.0
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Ledantevirus›
Oita_virus
TaxID: 1272953
Cluster
View cluster (89 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 45-207
Domain cluster:
rep: matrix__YP_010087311__Muir_Springs_virus__932700__D68-219
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06326.19 best | Vesiculo_matrix | 124.3 | 9.00e-36 | 99.4% | 72.6% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lg7A00 | 3.10.460.10 | Alpha Beta › Roll › VSV matrix protein › VSV matrix protein | 0.85 | 78.0 | 7.83e-01 | 100.0% | 95.7% |
| 2w2sA00 | 3.10.460.20 | Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 | 0.84 | 75.0 | 7.52e-01 | 100.0% | 93.3% |
| 3jamD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.65 | 28.0 | 3.10e-01 | 71.2% | 49.6% |
| 2egjA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.55 | 28.0 | 3.14e-01 | 92.0% | 60.3% |
| 2g47A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 36.0 | 3.30e-01 | 73.6% | 77.8% |
| 4jdzA02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 36.0 | 3.59e-01 | 71.8% | 86.1% |
| 1hw7A01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.50 | 40.0 | 3.96e-01 | 84.7% | 93.6% |
| 3eoqB02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.50 | 36.0 | 3.50e-01 | 73.0% | 94.5% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 184954 | 845.1.1.0 ↗ | a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein | 0.84 | 75.0 | 7.52e-01 | 100.0% | 93.3% |
| 2966642 | 845.1.1.2 ↗ | a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein › Vesiculo_matrix | 0.83 | 79.0 | 7.49e-01 | 100.0% | 86.2% |
| 169957 | 845.1.1.0 ↗ | a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein | 0.82 | 78.0 | 7.47e-01 | 100.0% | 88.6% |
| 4255187 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.70 | 29.0 | 3.61e-01 | 71.8% | 60.0% |
| 4832865 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.67 | 29.0 | 3.30e-01 | 71.8% | 53.6% |
| 3322115 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.67 | 29.0 | 3.44e-01 | 72.4% | 58.3% |
| 4956195 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.66 | 28.0 | 3.38e-01 | 70.6% | 59.1% |
| 4947174 | 230.2.1.0 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C | 0.66 | 27.0 | 3.23e-01 | 70.6% | 54.2% |
| 4211925 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.66 | 27.0 | 3.04e-01 | 70.6% | 47.4% |
| 3597467 | 230.2.1.0 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C | 0.66 | 28.0 | 3.15e-01 | 71.2% | 51.2% |
| 4595711 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.65 | 28.0 | 3.08e-01 | 71.2% | 49.6% |
| 4942812 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.65 | 27.0 | 3.21e-01 | 71.2% | 55.0% |
| 4932705 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.63 | 27.0 | 3.15e-01 | 71.2% | 53.6% |
| 3923950 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.62 | 27.0 | 3.41e-01 | 73.0% | 66.0% |
| 4316087 | 230.2.1.0 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C | 0.58 | 29.0 | 3.36e-01 | 71.8% | 65.0% |
| 3470249 | 304.42.1.0 ↗ | a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC | 0.54 | 38.0 | 4.03e-01 | 71.8% | 95.2% |
| 3761249 | 11.2.1.36 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › MAP10_N | 0.51 | 36.0 | 3.97e-01 | 72.4% | 97.8% |