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matrix_protein_M
Euk-VirYellow_fever_virus
matrix_protein_M__NP_776001__Yellow_fever_virus__11089
Identity
- Accession:
- NP_776001 ↗
- Protein ID:
- matrix_protein_M
- Kingdom:
- euk
Quality
74.3
mean pLDDT
Taxonomy
Orthornavirae›
Kitrinoviricota›
Flasuviricetes›
Amarillovirales›
Flaviviridae›
Orthoflavivirus›
Yellow_fever_virus
TaxID: 11089
Cluster
View cluster (20 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-74
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01004.25 best | Flavi_M | 93.9 | 5.40e-27 | 100.0% | 68.9% |
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3j27B00 | 1.10.8.970 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Flavivirus envelope glycoprotein M-like | 0.88 | 74.0 | 6.61e-01 | 96.1% | 66.7% |
| 3rlbA00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.83 | 58.0 | 3.89e-01 | 72.5% | 36.4% |
| 2vk9A04 | 1.10.274.80 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › | 0.78 | 53.0 | 4.15e-01 | 70.6% | 35.6% |
| 4g12A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.78 | 54.0 | 3.82e-01 | 72.5% | 26.2% |
| 1f05A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.77 | 64.0 | 3.91e-01 | 94.1% | 15.8% |
| 2lqxA00 | 6.10.250.1700 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.75 | 52.0 | 5.63e-01 | 74.5% | 100.0% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.74 | 51.0 | 3.96e-01 | 72.5% | 34.2% |
| 2jfrA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.72 | 52.0 | 3.37e-01 | 76.5% | 19.2% |
| 4okvE00 | 6.10.140.1890 | Special › Helix non-globular › Helix Hairpins › | 0.71 | 52.0 | 4.84e-01 | 78.4% | 75.4% |
| 1h3lB00 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.71 | 53.0 | 4.63e-01 | 80.4% | 53.8% |
| 2k0nA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.70 | 53.0 | 4.55e-01 | 84.3% | 68.2% |
| 1w0bA01 | 1.20.58.420 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP | 0.69 | 47.0 | 3.92e-01 | 72.5% | 40.2% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.69 | 46.0 | 3.65e-01 | 72.5% | 33.0% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 48.0 | 4.45e-01 | 78.4% | 59.7% |
| 3fgrA02 | 1.10.439.20 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2 | 0.66 | 50.0 | 3.84e-01 | 86.3% | 85.2% |
| 1o5wA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.66 | 54.0 | 3.63e-01 | 92.2% | 82.7% |
| 2x49A03 | 1.10.8.540 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › FHIPEP family, domain 3 | 0.66 | 48.0 | 4.10e-01 | 92.2% | 46.7% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.64 | 44.0 | 4.11e-01 | 70.6% | 73.8% |
| 1dqeA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.64 | 56.0 | 4.12e-01 | 100.0% | 89.1% |
| 4hiaA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.64 | 47.0 | 3.27e-01 | 80.4% | 23.9% |
| 4bwcA02 | 1.10.439.20 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2 | 0.63 | 48.0 | 3.79e-01 | 86.3% | 89.7% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.62 | 48.0 | 2.97e-01 | 94.1% | 29.4% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.61 | 50.0 | 3.79e-01 | 92.2% | 88.1% |
| 3l4aA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.61 | 50.0 | 3.93e-01 | 98.0% | 90.9% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.60 | 45.0 | 4.05e-01 | 78.4% | 100.0% |
| 2yx8A00 | 1.10.150.510 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family | 0.60 | 46.0 | 3.96e-01 | 82.4% | 58.0% |
| 1vibA00 | 1.10.287.120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Neurotoxin B-IV-like | 0.60 | 43.0 | 4.29e-01 | 80.4% | 83.6% |
| 1hwyA01 | 1.10.287.140 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 41.0 | 4.18e-01 | 80.4% | 90.2% |
| 2ntxA01 | 1.20.58.2010 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 | 0.58 | 44.0 | 2.94e-01 | 84.3% | 34.3% |
| 1xdxA01 | 3.30.1140.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 | 0.57 | 43.0 | 3.55e-01 | 88.2% | 43.0% |
| 1yzbA02 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.57 | 40.0 | 4.08e-01 | 80.4% | 84.8% |
| 2aj6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 42.0 | 3.23e-01 | 86.3% | 34.2% |
| 4ysxC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.57 | 41.0 | 3.12e-01 | 86.3% | 31.4% |
| 2bg1A01 | 3.90.1310.40 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.56 | 45.0 | 4.06e-01 | 100.0% | 63.6% |
| 2au3A04 | 1.20.50.30 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › | 0.55 | 37.0 | 3.67e-01 | 72.5% | 65.5% |
| 3bm1A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.53 | 41.0 | 2.96e-01 | 92.2% | 81.4% |
| 5u1aL00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 42.0 | 3.00e-01 | 90.2% | 73.5% |
| 3v9rB00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.50 | 40.0 | 3.71e-01 | 96.1% | 83.3% |
| 5k3hB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.50 | 41.0 | 3.07e-01 | 92.2% | 59.4% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5052463 | 3273.1.1.0 ↗ | alpha arrays › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins | 0.87 | 63.0 | 5.35e-01 | 76.5% | 51.2% |
| 3798232 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.86 | 59.0 | 4.89e-01 | 72.5% | 45.5% |
| 5017842 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.83 | 57.0 | 4.80e-01 | 72.5% | 45.9% |
| 3228717 | 103.4.1.1 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX | 0.80 | 67.0 | 5.79e-01 | 90.2% | 72.0% |
| 3347379 | 3470.1.1.26 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF543 | 0.77 | 58.0 | 5.32e-01 | 80.4% | 66.2% |
| 3331967 | 397.7.1.3 ↗ | few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 › DUF842 | 0.77 | 54.0 | 5.53e-01 | 74.5% | 80.0% |
| 4669981 | 230.3.1.0 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain | 0.77 | 61.0 | 4.36e-01 | 88.2% | 30.3% |
| 3287859 | 106.1.1.11 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N | 0.77 | 53.0 | 4.07e-01 | 72.5% | 33.9% |
| 3253260 | 5069.1.3.4 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › CybS | 0.76 | 52.0 | 4.10e-01 | 72.5% | 35.8% |
| 3335328 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.76 | 58.0 | 4.69e-01 | 84.3% | 62.0% |
| 3639079 | 3826.1.1.17 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › COPIIcoated_ERV | 0.75 | 51.0 | 5.04e-01 | 72.5% | 70.9% |
| 5051457 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.75 | 51.0 | 4.57e-01 | 72.5% | 53.3% |
| 3230949 | 103.4.1.1 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX | 0.74 | 57.0 | 5.06e-01 | 84.3% | 77.3% |
| 3192289 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.74 | 53.0 | 3.67e-01 | 78.4% | 56.6% |
| 3597909 | 5094.1.1.0 ↗ | a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like | 0.70 | 53.0 | 4.09e-01 | 86.3% | 35.8% |
| 3489683 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.69 | 51.0 | 4.55e-01 | 80.4% | 56.0% |
| 3349480 | 159.1.2.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related | 0.69 | 55.0 | 4.69e-01 | 92.2% | 55.6% |
| 3948115 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.69 | 46.0 | 2.62e-01 | 70.6% | 6.6% |
| 3574388 | 103.9.1.0 ↗ | alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain | 0.68 | 59.0 | 4.95e-01 | 98.0% | 58.9% |
| 5012687 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.68 | 52.0 | 4.26e-01 | 86.3% | 45.3% |
| 3596791 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.67 | 50.0 | 3.36e-01 | 86.3% | 20.0% |
| 5022551 | 3788.1.1.0 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) | 0.67 | 49.0 | 3.77e-01 | 78.4% | 90.0% |
| 3455488 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.67 | 49.0 | 4.74e-01 | 88.2% | 70.0% |
| 3453796 | 7519.1.1.11 ↗ | a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › Rick_17kDa_Anti, PF29034 | 0.66 | 50.0 | 4.03e-01 | 86.3% | 41.0% |
| 3972992 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.62 | 42.0 | 3.94e-01 | 70.6% | 100.0% |
| 3482882 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.59 | 47.0 | 4.52e-01 | 94.1% | 80.0% |
| 3402099 | 5043.2.1.5 ↗ | extended segments › Sensor proteins transmembrane domains › NarQ transmembrane domain › NarQ transmembrane domain › ATP_synt_H | 0.53 | 39.0 | 3.46e-01 | 80.4% | 52.0% |