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matrix_protein

Euk-Vir

Infectious_hematopoietic_necrosis_virus

matrix_protein__NP_042678__Infectious_hematopoietic_necrosis_virus__11290

Identity

Accession:
NP_042678 ↗
Protein ID:
matrix_protein
Kingdom:
euk

Quality

56.8 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Novirhabdovirus› Infectious_hematopoietic_necrosis_virus

TaxID: 11290

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-140
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03397.20 best Rhabdo_matrix 187.7 1.80e-55 100.0% 65.5%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2k3oA00 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.60 51.0 4.88e-01 93.6% 93.0%
1ks6A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.58 31.0 3.20e-01 100.0% 53.3%
1uw4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 40.0 4.31e-01 99.1% 92.3%
3gtyX02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.54 30.0 3.42e-01 100.0% 71.4%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 38.0 4.18e-01 100.0% 91.0%
2ek0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.54 33.0 3.64e-01 71.8% 75.6%
1u53A00 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.52 37.0 3.09e-01 73.6% 85.5%
3aleA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 36.0 3.36e-01 100.0% 54.5%
1fthA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.51 35.0 3.49e-01 89.1% 66.7%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 34.0 3.43e-01 72.7% 66.1%
1kvdB00 3.30.44.10 Alpha Beta › 2-Layer Sandwich › Smk Toxin, Beta chain › Smk Toxin, beta chain 0.51 29.0 3.36e-01 99.1% 77.9%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 29.0 3.26e-01 83.6% 73.2%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3223903 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.60 29.0 3.29e-01 100.0% 61.2%
4927291 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.56 39.0 4.33e-01 99.1% 91.8%
3792164 11.1.1.935 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26284 0.56 49.0 4.66e-01 98.2% 90.0%
5032543 301.8.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › 4'-phosphopantetheinyl transferase › 4'-phosphopantetheinyl transferase › ACPS 0.53 41.0 3.94e-01 90.0% 70.8%
4236888 304.10.1.0 ↗ a+b two layers › Alpha-beta plaits › RuBisCO, large subunit, small (N-terminal) domain › RuBisCO, large subunit, small (N-terminal) domain 0.53 44.0 4.43e-01 100.0% 90.9%
3596400 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.52 46.0 4.44e-01 99.1% 90.4%
3657448 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.51 29.0 2.74e-01 71.8% 43.6%
3729609 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.50 43.0 4.30e-01 100.0% 93.6%
D2 medium residues 151-180
PDB