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matrix_protein
Euk-VirSprivirus_cyprinus
matrix_protein__NP_116746__Sprivirus_cyprinus__696863
Identity
- Accession:
- NP_116746 ↗
- Protein ID:
- matrix_protein
- Kingdom:
- euk
Quality
75.9
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Sprivivirus›
Sprivivirus_cyprinus
TaxID: 696863
Cluster
View cluster (89 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 41-202
Domain cluster:
rep: matrix__YP_010087311__Muir_Springs_virus__932700__D68-219
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06326.19 best | Vesiculo_matrix | 94.2 | 1.50e-26 | 99.4% | 77.4% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lg7A00 | 3.10.460.10 | Alpha Beta › Roll › VSV matrix protein › VSV matrix protein | 0.93 | 87.0 | 8.71e-01 | 100.0% | 95.1% |
| 2w2sA00 | 3.10.460.20 | Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 | 0.81 | 72.0 | 7.23e-01 | 100.0% | 92.6% |
| 7pwfD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.65 | 26.0 | 3.56e-01 | 71.0% | 69.7% |
| 3jamD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.65 | 28.0 | 3.13e-01 | 74.1% | 50.4% |
| 2rrnA01 | 3.30.70.2040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 30.0 | 3.97e-01 | 73.5% | 100.0% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 32.0 | 4.09e-01 | 72.2% | 100.0% |
| 3of6E00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 31.0 | 3.69e-01 | 71.6% | 83.7% |
| 2efpA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.52 | 31.0 | 3.85e-01 | 97.5% | 96.9% |
| 4za1C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 31.0 | 3.82e-01 | 78.4% | 100.0% |
| 4fprB00 | 3.30.70.2910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 39.0 | 4.28e-01 | 95.7% | 100.0% |
| 3ce8A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 29.0 | 3.64e-01 | 77.2% | 97.8% |
| 6njyA01 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 35.0 | 3.97e-01 | 70.4% | 100.0% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.51 | 32.0 | 3.74e-01 | 72.8% | 90.2% |
| 1bwvA01 | 3.30.70.150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain | 0.51 | 35.0 | 3.86e-01 | 72.8% | 88.3% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2966642 | 845.1.1.2 ↗ | a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein › Vesiculo_matrix | 0.91 | 88.0 | 8.25e-01 | 100.0% | 85.7% |
| 169957 | 845.1.1.0 ↗ | a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein | 0.90 | 86.0 | 8.22e-01 | 100.0% | 88.0% |
| 184954 | 845.1.1.0 ↗ | a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein | 0.81 | 72.0 | 7.23e-01 | 100.0% | 92.6% |
| 4255187 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.68 | 30.0 | 3.65e-01 | 75.3% | 61.8% |
| 4832865 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.66 | 29.0 | 3.29e-01 | 74.1% | 53.6% |
| 3322115 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.66 | 29.0 | 3.42e-01 | 74.7% | 58.3% |
| 4942812 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.66 | 28.0 | 3.32e-01 | 74.1% | 55.8% |
| 4956195 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.66 | 28.0 | 3.42e-01 | 73.5% | 60.0% |
| 4932705 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.66 | 28.0 | 3.24e-01 | 73.5% | 53.6% |
| 3992439 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.62 | 33.0 | 3.49e-01 | 91.4% | 55.9% |
| 3923950 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.61 | 26.0 | 3.30e-01 | 72.2% | 65.0% |
| 5028718 | 223.8.1.0 ↗ | a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain | 0.59 | 25.0 | 3.07e-01 | 74.1% | 60.0% |
| 3789174 | 11.2.1.17 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 | 0.57 | 42.0 | 4.69e-01 | 77.2% | 99.2% |
| 3175186 | 11.2.1.17 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 | 0.55 | 40.0 | 4.30e-01 | 75.9% | 95.1% |
| 3902600 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.53 | 33.0 | 3.96e-01 | 76.5% | 97.0% |
| 3799609 | 11.2.1.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › B9-C2 | 0.53 | 38.0 | 4.17e-01 | 75.3% | 97.8% |
| 4149293 | 11.1.1.805 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 | 0.52 | 31.0 | 3.30e-01 | 71.0% | 64.8% |
| 3656280 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.52 | 39.0 | 4.04e-01 | 77.2% | 98.0% |
| 3595908 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.52 | 38.0 | 4.14e-01 | 74.7% | 98.5% |
| 3305382 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.51 | 38.0 | 4.02e-01 | 76.5% | 87.6% |
| 3709520 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.51 | 37.0 | 3.99e-01 | 75.3% | 98.6% |
| 3403552 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 35.0 | 3.81e-01 | 75.3% | 85.2% |
| 3593942 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.50 | 36.0 | 3.72e-01 | 72.8% | 84.7% |
| 3640140 | 11.2.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2, C2_Mug190_3rd | 0.50 | 45.0 | 3.43e-01 | 100.0% | 80.0% |