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matrix_protein
Euk-VirHapavirus_wongabel
matrix_protein__YP_002333277__Hapavirus_wongabel__1972626
Identity
- Accession:
- YP_002333277 ↗
- Protein ID:
- matrix_protein
- Kingdom:
- euk
Quality
81.7
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Hapavirus›
Hapavirus_wongabel
TaxID: 1972626
Cluster
View cluster (89 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 52-196
Domain cluster:
rep: matrix__YP_010087311__Muir_Springs_virus__932700__D68-219
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06326.19 best | Vesiculo_matrix | 84.1 | 1.90e-23 | 98.6% | 67.8% |
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lg7A00 | 3.10.460.10 | Alpha Beta › Roll › VSV matrix protein › VSV matrix protein | 0.84 | 78.0 | 7.44e-01 | 100.0% | 86.0% |
| 2w2sA00 | 3.10.460.20 | Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 | 0.84 | 74.0 | 7.09e-01 | 100.0% | 82.2% |
| 6iomB01 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.76 | 29.0 | 4.05e-01 | 75.9% | 68.8% |
| 2ns9A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.62 | 43.0 | 4.29e-01 | 70.3% | 100.0% |
| 3p9vA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.60 | 41.0 | 4.07e-01 | 71.0% | 99.4% |
| 3rt0C00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.58 | 40.0 | 3.82e-01 | 70.3% | 89.0% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 35.0 | 4.28e-01 | 78.6% | 97.8% |
| 5e4bA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 40.0 | 3.78e-01 | 73.8% | 95.5% |
| 1vzyA01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.55 | 46.0 | 3.97e-01 | 90.3% | 87.2% |
| 1f3vA00 | 3.30.70.680 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TRADD, N-terminal domain | 0.55 | 50.0 | 4.85e-01 | 100.0% | 95.6% |
| 1fm4A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 37.0 | 3.68e-01 | 70.3% | 96.2% |
| 3klxB00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 37.0 | 3.50e-01 | 70.3% | 82.9% |
| 3mgjA00 | 3.30.70.2690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain | 0.53 | 35.0 | 4.12e-01 | 81.4% | 100.0% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.53 | 34.0 | 3.82e-01 | 75.2% | 83.2% |
| 4acvA00 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.53 | 37.0 | 4.02e-01 | 73.1% | 87.4% |
| 1hw7A01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.53 | 44.0 | 4.22e-01 | 91.7% | 93.6% |
| 5i8fA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 36.0 | 3.52e-01 | 71.0% | 95.7% |
| 3hdiA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 39.0 | 3.59e-01 | 80.7% | 87.4% |
| 2wz1B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.51 | 41.0 | 3.75e-01 | 86.2% | 65.3% |
| 3eoqB02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 39.0 | 3.61e-01 | 80.0% | 93.4% |
| 1q2lA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 39.0 | 3.40e-01 | 81.4% | 81.8% |
| 3nqnA00 | 3.30.530.70 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › Uncharacterised protein PF12723, DUF3809 | 0.51 | 36.0 | 3.58e-01 | 72.4% | 100.0% |
| 2gx8A02 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 32.0 | 3.71e-01 | 75.2% | 92.9% |
| 2qrrA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.50 | 30.0 | 3.46e-01 | 78.6% | 84.5% |
| 1jw3A00 | 3.55.10.10 | Alpha Beta › 3-Layer(bab) Sandwich › Archease, Possible Chaperone; Chain: A; domain 1 › Archease domain | 0.50 | 33.0 | 3.42e-01 | 100.0% | 69.3% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2966642 | 845.1.1.2 ↗ | a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein › Vesiculo_matrix | 0.85 | 81.0 | 7.28e-01 | 100.0% | 77.8% |
| 169957 | 845.1.1.0 ↗ | a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein | 0.85 | 80.0 | 7.31e-01 | 100.0% | 79.9% |
| 184954 | 845.1.1.0 ↗ | a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein | 0.84 | 74.0 | 7.09e-01 | 100.0% | 82.2% |
| 4255187 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.70 | 33.0 | 3.76e-01 | 78.6% | 59.1% |
| 3322115 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.66 | 31.0 | 3.53e-01 | 79.3% | 57.4% |
| 4155789 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.65 | 30.0 | 3.35e-01 | 77.9% | 53.3% |
| 4153628 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.65 | 30.0 | 3.46e-01 | 77.9% | 58.2% |
| 4149478 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.64 | 30.0 | 3.30e-01 | 77.9% | 53.3% |
| 3243630 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.62 | 29.0 | 3.61e-01 | 81.4% | 68.9% |
| 3925462 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.60 | 28.0 | 3.41e-01 | 77.2% | 66.0% |
| 4377299 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.59 | 38.0 | 4.40e-01 | 74.5% | 89.5% |
| 4946247 | 304.57.1.0 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like | 0.59 | 42.0 | 4.75e-01 | 77.9% | 99.0% |
| 4936039 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.59 | 42.0 | 4.74e-01 | 80.0% | 98.2% |
| 3934872 | 3122.1.1.2 ↗ | a+b complex topology › MESD › MESD › MESD › SCVP | 0.59 | 38.0 | 4.37e-01 | 76.6% | 90.5% |
| 4219210 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.59 | 42.0 | 4.74e-01 | 80.0% | 99.1% |
| 4605207 | 304.57.1.0 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like | 0.58 | 42.0 | 4.56e-01 | 80.7% | 93.9% |
| 3336175 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.57 | 40.0 | 3.64e-01 | 70.3% | 80.5% |
| 4316087 | 230.2.1.0 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C | 0.56 | 31.0 | 3.47e-01 | 78.6% | 66.7% |
| 3672291 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.56 | 39.0 | 3.01e-01 | 70.3% | 63.9% |
| 3603456 | 304.8.1.82 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 | 0.55 | 33.0 | 4.09e-01 | 78.6% | 95.6% |
| 4317100 | 230.2.1.2 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › VAR1 | 0.55 | 31.0 | 3.45e-01 | 77.2% | 68.7% |
| 3319618 | 331.3.1.40 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF1997 | 0.55 | 38.0 | 3.54e-01 | 70.3% | 100.0% |
| 3702434 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.55 | 39.0 | 3.30e-01 | 71.0% | 92.5% |
| 4002543 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 35.0 | 3.99e-01 | 77.2% | 87.6% |
| 2814969 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.54 | 37.0 | 3.77e-01 | 70.3% | 98.6% |
| 4194439 | 848.1.1.1 ↗ | a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 | 0.54 | 44.0 | 3.83e-01 | 90.3% | 85.5% |
| 3992645 | 273.1.1.0 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like | 0.53 | 34.0 | 3.34e-01 | 99.3% | 60.4% |
| 3609636 | 309.1.1.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase | 0.52 | 40.0 | 3.22e-01 | 80.0% | 60.3% |
| 3301512 | 309.1.1.6 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C,Peptidase_M16_M | 0.52 | 40.0 | 3.42e-01 | 80.7% | 74.2% |
| 5021426 | 304.51.1.11 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_N | 0.52 | 36.0 | 4.14e-01 | 81.4% | 100.0% |
| 1183435 | 309.1.1.4 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C | 0.51 | 39.0 | 3.60e-01 | 80.0% | 91.5% |
| 4941817 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.51 | 36.0 | 4.04e-01 | 77.2% | 98.2% |