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matrix_protein

Euk-Vir

Persimmon_virus_A

matrix_protein__YP_006576504__Persimmon_virus_A__1211480

Identity

Accession:
YP_006576504 ↗
Protein ID:
matrix_protein
Kingdom:
euk

Quality

77.2 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Alphacytorhabdovirus› Persimmon_virus_A

TaxID: 1211480

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 38-182
PDB
Domain cluster: rep: matrix_protein__YP_009506259__Cacao_swollen_shoot_Togo_A_virus__1960254__D14-163
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1lg7A00 3.10.460.10 Alpha Beta › Roll › VSV matrix protein › VSV matrix protein 0.73 60.0 5.77e-01 100.0% 76.8%
1ug8A00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.64 27.0 3.45e-01 97.9% 64.4%
5aj3F00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.63 41.0 4.43e-01 84.8% 77.2%
4mt1A06 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.62 42.0 4.91e-01 80.0% 99.0%
1nxiA00 3.30.70.970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like 0.61 37.0 3.88e-01 84.8% 65.2%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 34.0 4.31e-01 85.5% 97.5%
1nbeB01 3.30.70.140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aspartate carbamoyltransferase regulatory subunit, N-terminal domain 0.60 32.0 3.85e-01 82.1% 78.5%
2d9oA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 35.0 4.06e-01 82.1% 84.0%
1uw4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 36.0 4.38e-01 97.2% 100.0%
5w0hA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 32.0 4.10e-01 80.7% 100.0%
3ue2A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 35.0 4.18e-01 80.7% 98.9%
1lfwA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 39.0 4.51e-01 84.1% 100.0%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 34.0 4.07e-01 97.9% 96.7%
2x3gA00 3.30.70.1910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 34.0 3.77e-01 86.2% 76.7%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.55 36.0 4.27e-01 95.9% 100.0%
4fprB00 3.30.70.2910 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 43.0 4.55e-01 88.3% 94.5%
3m05B01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 34.0 4.16e-01 84.1% 98.9%
3bm7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 34.0 3.93e-01 84.1% 90.6%
1iujA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 33.0 3.83e-01 83.4% 94.1%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3257012 229.1.1.1 ↗ a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like › CDC48_2 0.66 32.0 3.83e-01 86.2% 67.4%
3867328 304.47.1.0 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain 0.59 44.0 4.93e-01 97.9% 99.1%
3537609 304.47.1.1 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.58 44.0 4.91e-01 100.0% 100.0%
4116209 304.130.1.1 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.57 34.0 4.22e-01 96.6% 95.6%
3384464 304.127.1.0 ↗ a+b two layers › Alpha-beta plaits › Notch heterodimerization domain › Notch heterodimerization domain 0.56 44.0 4.60e-01 82.1% 100.0%
3842059 11.1.1.927 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29951 0.56 43.0 4.63e-01 81.4% 93.6%
4105022 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.55 32.0 3.90e-01 97.2% 90.0%
4936599 304.51.1.13 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6_I-A 0.54 41.0 4.49e-01 80.0% 95.8%
3590219 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.53 33.0 4.08e-01 99.3% 100.0%
5039496 101.1.2.914 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.53 27.0 3.35e-01 100.0% 76.7%
1716092 309.1.1.4 ↗ a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C 0.53 36.0 3.30e-01 71.0% 89.6%
4990439 304.116.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor 0.52 33.0 3.88e-01 84.1% 92.0%
4467707 304.116.1.1 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › PCRF 0.52 36.0 4.02e-01 96.6% 93.6%
3890598 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 42.0 4.17e-01 89.7% 90.3%
5066984 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.51 26.0 3.35e-01 89.0% 87.5%
3325475 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.51 41.0 4.05e-01 90.3% 81.0%
5041027 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.50 30.0 3.62e-01 97.9% 89.5%