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matrix_protein
Euk-VirPneumovirus_dog_Bari_100-12_ITA_2012
matrix_protein__YP_009094039__Pneumovirus_dog_Bari_100-12_ITA_2012__2482952
Identity
- Accession:
- YP_009094039 ↗
- Protein ID:
- matrix_protein
- Kingdom:
- euk
Quality
72.0
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Pneumoviridae›
Orthopneumovirus›
Pneumovirus_dog/Bari/100-12/ITA/2012
TaxID: 2482952
Cluster
View cluster (63 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-120
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03393.22 best | Matrix_Pneumo_N | 115.3 | 2.30e-33 | 100.0% | 92.9% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vqpA01 | 2.70.20.30 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › HRSV-S2 matrix protein, N-terminal domain | 0.97 | 92.0 | 9.24e-01 | 100.0% | 97.5% |
| 4g1lA01 | 2.70.20.50 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Viral matrix protein, N-terminal domain | 0.86 | 81.0 | 7.15e-01 | 100.0% | 79.1% |
| 1h2cA00 | 2.70.20.20 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain | 0.74 | 65.0 | 6.40e-01 | 94.1% | 95.2% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.68 | 36.0 | 4.36e-01 | 92.4% | 78.9% |
| 1i7dA03 | 2.70.20.10 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 | 0.59 | 51.0 | 4.83e-01 | 94.1% | 95.7% |
| 2g2sA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.59 | 31.0 | 4.00e-01 | 86.6% | 92.2% |
| 3j7yD01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 31.0 | 3.30e-01 | 70.6% | 54.7% |
| 2pslA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.58 | 50.0 | 4.13e-01 | 95.8% | 71.9% |
| 5fgoA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 26.0 | 3.55e-01 | 78.2% | 87.1% |
| 3e0jB00 | 3.90.1030.20 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › DNA polymerase delta, p66 (Cdc27) subunit, wHTH domain | 0.54 | 31.0 | 2.93e-01 | 98.3% | 46.2% |
| 2x1cB01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.52 | 38.0 | 2.91e-01 | 76.5% | 80.9% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.52 | 26.0 | 3.53e-01 | 90.8% | 96.5% |
| 2n59A00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 33.0 | 3.52e-01 | 100.0% | 78.2% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1503359 | 54.1.1.2 ↗ | beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Pneumo_matrix | 0.96 | 93.0 | 8.97e-01 | 100.0% | 92.2% |
| 863407 | 54.1.1.1 ↗ | beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix | 0.84 | 79.0 | 7.15e-01 | 100.0% | 83.7% |
| 2887049 | 54.1.1.1 ↗ | beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix | 0.80 | 66.0 | 6.89e-01 | 88.2% | 99.1% |
| 3628875 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.70 | 53.0 | 5.79e-01 | 90.8% | 97.9% |
| 5045292 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.68 | 53.0 | 5.60e-01 | 90.8% | 93.3% |
| 4943298 | 264.2.1.1 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac | 0.66 | 51.0 | 5.44e-01 | 90.8% | 93.3% |
| 4933037 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.62 | 52.0 | 5.17e-01 | 90.8% | 95.2% |
| 4929367 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.61 | 53.0 | 5.33e-01 | 94.1% | 99.2% |
| 1501390 | 54.1.1.7 ↗ | beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix_Pneumo_C | 0.59 | 49.0 | 4.86e-01 | 90.8% | 92.2% |
| 3543785 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 35.0 | 3.88e-01 | 96.6% | 80.0% |
| 4230632 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.54 | 43.0 | 4.19e-01 | 99.2% | 77.4% |
| 3967781 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.51 | 34.0 | 3.10e-01 | 100.0% | 50.0% |
| 4939098 | 11.14.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 › AglB_L1 | 0.51 | 30.0 | 3.25e-01 | 95.0% | 69.7% |
D2
high
residues 123-145_147-252