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matrix_protein

Euk-Vir

Avian_metaavulavirus_5

matrix_protein__YP_009094157__Avian_metaavulavirus_5__2560315

Identity

Accession:
YP_009094157 ↗
Protein ID:
matrix_protein
Kingdom:
euk

Quality

81.6 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Paramyxoviridae› Metaavulavirus› avian_paramyxovirus_5

TaxID: 2560315

Cluster

View cluster (63 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-17_184-337
PDB
Domain cluster: rep: M__YP_009508513__Antarctic_penguin_virus_B__2006073__D6-17_185-340
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23765.2 best Matrix_Paramyxo_C 123.3 1.10e-35 89.9% 93.7%
D2 high residues 30-68_83-182
PDB
Domain cluster: rep: matrix_protein__YP_009094039__Pneumovirus_dog_Bari_100-12_ITA_2012__2482952__D2-120
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00661.29 best Matrix_Paramyxo_N 154.0 3.80e-45 100.0% 84.6%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g1lA01 2.70.20.50 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Viral matrix protein, N-terminal domain 0.95 89.0 8.32e-01 96.4% 82.8%
2vqpA01 2.70.20.30 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › HRSV-S2 matrix protein, N-terminal domain 0.85 70.0 7.53e-01 94.2% 100.0%
1h2cA00 2.70.20.20 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain 0.80 64.0 6.74e-01 82.7% 96.8%
3f1jA00 2.70.20.40 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Borna disease virus, matrix protein 0.64 50.0 5.05e-01 82.7% 86.4%
4g1gA02 2.70.20.60 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Viral matrix protein, C-terminal domain 0.61 50.0 4.69e-01 87.8% 81.1%
3nswA00 2.40.50.780 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 33.0 3.68e-01 91.4% 67.0%
2dd7A00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.59 51.0 4.47e-01 94.2% 79.4%
3gtyX02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.54 32.0 4.03e-01 88.5% 98.8%
2vfkA00 3.90.1140.10 Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase 0.53 41.0 3.63e-01 81.3% 89.8%
7rskA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 27.0 2.99e-01 79.1% 59.6%
2je8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 28.0 3.13e-01 81.3% 65.7%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 26.0 2.94e-01 81.3% 60.0%
4gc8B00 3.40.1550.10 Alpha Beta › 3-Layer(aba) Sandwich › Chemotaxis protein chec › CheC-like 0.51 35.0 3.30e-01 71.2% 70.1%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
863407 54.1.1.1 ↗ beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix 0.93 88.0 8.44e-01 96.4% 87.6%
2887049 54.1.1.1 ↗ beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix 0.90 70.0 7.85e-01 84.2% 100.0%
1503359 54.1.1.2 ↗ beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Pneumo_matrix 0.85 72.0 7.45e-01 95.0% 95.3%
3628875 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.69 47.0 5.46e-01 86.3% 100.0%
4987354 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.64 45.0 5.09e-01 87.1% 100.0%
5036765 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.62 44.0 4.96e-01 87.1% 100.0%
2321027 54.1.1.6 ↗ beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix_Paramyxo_C 0.62 48.0 4.57e-01 87.8% 69.0%
5054834 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 31.0 3.42e-01 80.6% 60.0%
4960285 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.59 45.0 4.93e-01 87.1% 98.3%
3962197 264.1.1.0 ↗ beta barrels › LigT-like › LigT-related › LigT-related 0.58 44.0 4.17e-01 79.1% 92.9%
3955687 264.1.1.9 ↗ beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 0.58 44.0 4.19e-01 79.1% 95.2%
4930521 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.58 45.0 4.83e-01 87.1% 98.3%
4936677 264.2.1.1 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain › Topoisom_bac 0.57 45.0 4.85e-01 88.5% 97.5%
3257660 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 32.0 3.37e-01 83.5% 61.6%
5060619 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.55 27.0 3.04e-01 82.0% 56.4%
3313835 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.54 32.0 3.30e-01 93.5% 60.0%
3603165 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 30.0 3.30e-01 82.0% 64.3%
3588907 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 31.0 3.53e-01 89.2% 78.0%
5007114 866.1.1.2 ↗ a+b duplicates or obligate multimers › CheC-like › CheC-like › CheC-like › CheC 0.52 37.0 3.26e-01 71.9% 69.0%
5002890 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 26.0 2.92e-01 78.4% 61.0%
5078060 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 28.0 3.06e-01 82.7% 62.7%