matrix_protein

Euk-Vir

Avian_paraavulavirus_3

matrix_protein__YP_009094214__Avian_paraavulavirus_3__2560327

Identity

72.3 mean pLDDT

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Paramyxoviridae› Paraavulavirus› Paraavulavirus_wisconsinense

TaxID: 2560327

View cluster (63 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 29-190

PDB

Domain cluster: rep: matrix_protein__YP_009094039__Pneumovirus_dog_Bari_100-12_ITA_2012__2482952__D2-120

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF00661.29 best	Matrix_Paramyxo_N	151.8	1.80e-44	100.0%	89.0%

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4g1lA01	2.70.20.50	Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Viral matrix protein, N-terminal domain	0.84	76.0	7.63e-01	100.0%	92.6%
2vqpA01	2.70.20.30	Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › HRSV-S2 matrix protein, N-terminal domain	0.83	60.0	6.93e-01	90.1%	99.2%
1h2cA00	2.70.20.20	Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain	0.77	55.0	6.25e-01	80.2%	95.2%
2awnC02	2.40.50.100	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain	0.57	25.0	3.39e-01	74.1%	80.8%
4g1gA02	2.70.20.60	Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Viral matrix protein, C-terminal domain	0.56	45.0	4.46e-01	85.8%	81.1%
4hssB01	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.54	26.0	2.89e-01	79.0%	54.3%
2r41A00	3.10.450.150	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein	0.53	31.0	3.72e-01	85.8%	89.3%
1h4uA00	2.40.155.10	Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein	0.51	46.0	4.00e-01	99.4%	83.7%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2887049	54.1.1.1 ↗	beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix	0.89	60.0	7.28e-01	81.5%	100.0%
863407	54.1.1.1 ↗	beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix	0.85	75.0	7.72e-01	100.0%	95.4%
1503359	54.1.1.2 ↗	beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Pneumo_matrix	0.82	60.0	6.70e-01	90.7%	94.6%
3056890	54.1.1.3 ↗	beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › VP40	0.62	50.0	5.18e-01	90.7%	89.5%
2321027	54.1.1.6 ↗	beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix_Paramyxo_C	0.61	43.0	4.29e-01	85.8%	69.0%
4375028	264.2.1.0 ↗	beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain	0.60	43.0	4.86e-01	81.5%	96.8%
3955687	264.1.1.9 ↗	beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2	0.55	41.0	4.11e-01	77.8%	95.2%
3586277	11.1.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like	0.53	28.0	3.26e-01	78.4%	71.3%

D2 high residues 196-360

PDB

Domain cluster: rep: M__YP_009508513__Antarctic_penguin_virus_B__2006073__D6-17_185-340

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF23765.2 best	Matrix_Paramyxo_C	97.7	8.10e-28	97.6%	98.7%