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matrix_protein

Euk-Vir

Wuhan_Insect_virus_7

matrix_protein__YP_009301741__Wuhan_Insect_virus_7__1608112

Identity

Accession:
YP_009301741 ↗
Protein ID:
matrix_protein
Kingdom:
euk

Quality

75.0 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Wuhan_Insect_virus_7

TaxID: 1608112

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 52-211
PDB
Domain cluster: rep: matrix__YP_010087311__Muir_Springs_virus__932700__D68-219
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06326.19 best Vesiculo_matrix 117.0 1.60e-33 99.4% 76.4%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w2sA00 3.10.460.20 Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 0.82 74.0 7.36e-01 100.0% 92.6%
1lg7A00 3.10.460.10 Alpha Beta › Roll › VSV matrix protein › VSV matrix protein 0.82 76.0 7.62e-01 100.0% 95.7%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.62 27.0 3.02e-01 72.5% 50.4%
1cqmA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.56 35.0 4.24e-01 75.6% 100.0%
3luyA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 31.0 3.89e-01 71.9% 97.8%
1azsA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.54 39.0 3.75e-01 99.4% 63.2%
1ekrA00 3.30.70.640 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain 0.53 39.0 4.10e-01 75.0% 90.2%
4za1C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 32.0 3.90e-01 75.6% 100.0%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.53 25.0 3.40e-01 75.6% 87.5%
3mwbB03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 31.0 3.79e-01 97.5% 94.7%
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.53 23.0 3.48e-01 98.8% 100.0%
4gafB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 31.0 3.60e-01 73.1% 82.7%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 31.0 3.84e-01 70.6% 100.0%
2wz1B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.52 40.0 3.72e-01 98.8% 64.3%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.52 32.0 3.89e-01 96.2% 100.0%
2f1fA02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.52 27.0 3.63e-01 74.4% 100.0%
4xeaA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.52 37.0 3.48e-01 73.1% 91.7%
1r89A03 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.51 37.0 4.05e-01 97.5% 89.6%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2966642 845.1.1.2 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein › Vesiculo_matrix 0.82 78.0 7.35e-01 100.0% 85.7%
184954 845.1.1.0 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein 0.82 74.0 7.36e-01 100.0% 92.6%
169957 845.1.1.0 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein 0.81 77.0 7.32e-01 100.0% 88.6%
4255187 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.66 29.0 3.52e-01 73.1% 60.9%
3925462 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.66 29.0 3.65e-01 73.8% 67.0%
3322115 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.64 28.0 3.34e-01 73.1% 58.3%
4155789 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.64 27.0 3.10e-01 70.6% 52.5%
4153628 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.63 27.0 3.22e-01 70.6% 57.3%
4317100 230.2.1.2 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › VAR1 0.57 28.0 3.33e-01 71.2% 67.0%
4939612 304.51.1.0 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related 0.55 39.0 4.46e-01 75.6% 100.0%
3471357 304.133.1.0 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein 0.54 34.0 3.82e-01 73.8% 82.5%
3603456 304.8.1.82 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 0.53 31.0 3.78e-01 73.1% 95.6%
4002543 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 32.0 3.77e-01 71.9% 89.5%
None — 0.52 39.0 3.72e-01 98.8% 64.8%
4883824 304.124.1.6 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF5072 0.51 35.0 3.82e-01 70.0% 89.9%
4941817 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.51 34.0 3.90e-01 70.6% 98.2%