←Back to structures

matrix_protein

Euk-Vir

Colocasia_bobone_disease-associated_virus

matrix_protein__YP_009362278__Colocasia_bobone_disease-associated_virus__1775456

Identity

Accession:
YP_009362278 ↗
Protein ID:
matrix_protein
Kingdom:
euk

Quality

73.7 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Betacytorhabdovirus› Colocasia_bobone_disease-associated_virus

TaxID: 1775456

Cluster

View cluster (18 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-159
PDB
Domain cluster: rep: matrix_protein__YP_009506259__Cacao_swollen_shoot_Togo_A_virus__1960254__D14-163
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.62 28.0 3.09e-01 83.3% 50.4%
2w2sA00 3.10.460.20 Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 0.61 55.0 5.50e-01 100.0% 94.5%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.59 26.0 3.41e-01 92.9% 73.3%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 32.0 3.79e-01 84.6% 86.3%
1l2mA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.54 37.0 4.08e-01 98.1% 89.8%
5yppA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 31.0 3.86e-01 96.2% 95.6%
2l8yA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.53 28.0 3.23e-01 86.5% 70.5%
3mjgX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 31.0 3.63e-01 85.3% 85.1%
2r55A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 38.0 3.46e-01 75.0% 78.8%
5ajiB03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 31.0 3.70e-01 77.6% 92.6%
2petA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 34.0 3.83e-01 87.2% 88.8%
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 25.0 3.44e-01 78.2% 92.3%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.51 32.0 3.63e-01 79.5% 87.0%
4fomA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 30.0 3.49e-01 84.6% 85.9%
3o4oB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 30.0 3.45e-01 80.1% 80.7%
3akoD00 6.20.160.10 Special › Other non-globular › HSP40/DNAj peptide-binding domain › 0.51 25.0 3.33e-01 81.4% 92.1%
1fp5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 29.0 3.41e-01 80.1% 84.0%
4ozjA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 33.0 3.93e-01 94.9% 100.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
184954 845.1.1.0 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein 0.61 55.0 5.50e-01 100.0% 94.5%
4205746 242.1.1.5 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.58 28.0 3.32e-01 81.4% 65.7%
3957909 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.55 25.0 2.58e-01 94.2% 41.3%
4938000 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.55 24.0 3.00e-01 80.8% 63.2%
3762904 11.1.1.1356 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig, C2-set_2 0.54 35.0 2.96e-01 86.5% 37.4%
3907806 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.53 34.0 3.88e-01 87.2% 87.0%
3932886 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 33.0 4.00e-01 79.5% 100.0%
5043596 304.15.1.0 ↗ a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain 0.53 33.0 3.77e-01 78.2% 84.3%
4376910 305.1.1.0 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.53 25.0 3.19e-01 80.1% 72.6%
5076457 882.1.1.4 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.52 40.0 4.21e-01 80.8% 95.2%
5046778 304.130.1.1 ↗ a+b two layers › Alpha-beta plaits › Uncharacterized protein MK0293 N-terminal domain › Uncharacterized protein MK0293 N-terminal domain › Ni_insertion 0.52 30.0 3.64e-01 91.0% 87.0%
3604263 882.1.1.4 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.52 40.0 4.14e-01 80.8% 86.6%
4998285 882.1.1.4 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.51 40.0 4.10e-01 80.8% 84.7%
185044 304.61.1.1 ↗ a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Dehydratase_hem 0.51 33.0 3.49e-01 80.8% 72.3%
5012937 304.116.1.6 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › acVLRF1 0.51 31.0 3.94e-01 78.8% 100.0%
4947046 882.1.1.0 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 0.51 40.0 4.16e-01 82.7% 95.3%
3619070 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.51 38.0 3.74e-01 76.9% 94.5%
4934880 882.1.1.4 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.51 40.0 4.25e-01 82.1% 94.2%
3523342 304.47.1.1 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.51 45.0 4.28e-01 96.8% 87.2%
4943808 882.1.1.4 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.51 39.0 4.04e-01 80.8% 86.0%
4977616 882.1.1.4 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.50 38.0 4.29e-01 79.5% 100.0%
5023895 882.1.1.4 ↗ a+b two layers › Ribosomal protein L5 › Ribosomal protein L5 › Ribosomal protein L5 › RNA_binding 0.50 40.0 4.13e-01 82.1% 97.9%