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matrix_protein

Euk-Vir

Culex_rhabdo-like_virus

matrix_protein__YP_009388614__Culex_rhabdo-like_virus__2010277

Identity

Accession:
YP_009388614 ↗
Protein ID:
matrix_protein
Kingdom:
euk

Quality

77.8 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Ohlsrhavirus› Culex_rhabdo-like_virus

TaxID: 2010277

Cluster

View cluster (89 members)

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 17-30_82-136
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w2sA00 3.10.460.20 Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 0.86 79.0 5.86e-01 100.0% 72.4%
1lg7A00 3.10.460.10 Alpha Beta › Roll › VSV matrix protein › VSV matrix protein 0.83 75.0 5.62e-01 100.0% 73.8%
3jtyB01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.71 61.0 3.73e-01 92.8% 99.7%
3v8uA04 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.64 52.0 4.24e-01 92.8% 96.5%
2vqeC02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.64 53.0 4.69e-01 94.2% 63.0%
3b7yA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.64 52.0 4.20e-01 94.2% 88.9%
3gtyX02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.63 52.0 4.96e-01 94.2% 83.3%
4npjB02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.61 51.0 4.09e-01 94.2% 92.3%
3jamD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.61 53.0 4.22e-01 94.2% 48.9%
5df7A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.61 50.0 3.15e-01 87.0% 83.4%
3rt0C00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 44.0 3.31e-01 79.7% 64.5%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 49.0 3.16e-01 94.2% 27.3%
7pwfD02 3.30.1140.32 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain 0.56 45.0 4.16e-01 88.4% 69.7%
3jafA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.56 38.0 2.80e-01 71.0% 85.8%
7l0jB01 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.56 41.0 3.86e-01 85.5% 62.9%
3klxB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 46.0 3.48e-01 94.2% 68.5%
2h6oA02 2.60.40.2810 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 44.0 3.47e-01 91.3% 63.9%
2kf2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.55 39.0 3.02e-01 76.8% 61.7%
8ediA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.76e-01 89.9% 91.3%
4dmiA02 2.60.120.1010 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.63e-01 95.7% 67.2%
2wyhA05 2.60.40.2210 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.37e-01 88.4% 67.9%
2l8yA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.52 44.0 3.85e-01 94.2% 61.9%
3c9aA03 2.20.20.160 Mainly Beta › Single Sheet › Anthopleurin-A › 0.52 40.0 3.98e-01 82.6% 91.5%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 43.0 3.96e-01 92.8% 98.9%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.52 45.0 3.51e-01 98.6% 82.9%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 37.0 3.06e-01 78.3% 70.5%
6ofsA04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.51 46.0 3.34e-01 100.0% 95.7%
2c4xA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 41.0 3.22e-01 91.3% 60.3%
2x1wL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 43.0 3.81e-01 97.1% 83.8%
2eefA01 2.60.40.2440 Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain 0.50 39.0 3.35e-01 91.3% 100.0%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
184954 845.1.1.0 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein 0.86 79.0 5.86e-01 100.0% 72.4%
2966642 845.1.1.2 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein › Vesiculo_matrix 0.82 75.0 5.36e-01 100.0% 67.2%
169957 845.1.1.0 ↗ a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein 0.81 73.0 5.30e-01 100.0% 69.0%
3972404 327.16.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin 0.74 63.0 4.53e-01 92.8% 94.7%
3592613 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.72 61.0 5.00e-01 94.2% 100.0%
3611302 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 57.0 4.58e-01 91.3% 100.0%
3709520 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.68 57.0 4.60e-01 94.2% 97.9%
3243630 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.67 54.0 4.96e-01 97.1% 67.8%
3596679 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.67 57.0 4.47e-01 97.1% 96.8%
3609902 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.66 54.0 4.46e-01 92.8% 98.5%
3923950 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.65 56.0 4.97e-01 95.7% 66.0%
3249011 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.65 54.0 4.39e-01 95.7% 92.9%
3998603 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.65 51.0 4.74e-01 95.7% 67.8%
4941178 223.8.1.0 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain 0.64 52.0 4.49e-01 92.8% 56.5%
4255187 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.64 55.0 4.66e-01 94.2% 58.2%
4211925 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.63 53.0 4.20e-01 94.2% 46.7%
3249540 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.63 53.0 4.49e-01 92.8% 57.3%
4155789 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.63 52.0 4.35e-01 94.2% 52.5%
4832865 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.63 53.0 4.35e-01 94.2% 51.2%
5000753 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.63 55.0 4.45e-01 97.1% 73.1%
4598977 230.2.1.0 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C 0.62 51.0 4.30e-01 87.0% 56.4%
3322115 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.62 53.0 4.43e-01 94.2% 55.7%
4028203 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.62 52.0 4.60e-01 91.3% 63.6%
4149478 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.62 50.0 4.14e-01 87.0% 51.7%
3240428 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.62 50.0 4.30e-01 95.7% 54.8%
3652196 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.62 52.0 4.18e-01 94.2% 47.8%
3220160 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 51.0 4.16e-01 95.7% 97.9%
4947174 230.2.1.0 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C 0.61 52.0 4.23e-01 89.9% 54.2%
5036930 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.61 53.0 4.36e-01 94.2% 55.0%
3939964 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.61 53.0 4.80e-01 98.6% 97.9%
4942812 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.61 51.0 4.21e-01 89.9% 54.2%
4460651 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.61 52.0 4.47e-01 94.2% 60.9%
4153628 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.61 50.0 4.26e-01 88.4% 57.3%
4956195 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.61 52.0 4.44e-01 94.2% 60.9%
4505312 230.2.1.2 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › VAR1 0.61 52.0 4.65e-01 94.2% 68.4%
4463842 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.60 52.0 4.24e-01 94.2% 52.0%
4932705 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.60 52.0 4.26e-01 95.7% 54.4%
3628227 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.60 52.0 4.45e-01 100.0% 60.0%
4457716 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.60 51.0 4.22e-01 94.2% 53.7%
3579723 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.60 49.0 5.04e-01 94.2% 100.0%
4316087 230.2.1.0 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C 0.59 50.0 4.17e-01 92.8% 65.0%
3618238 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.59 50.0 4.44e-01 98.6% 69.2%
3237858 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.58 52.0 4.35e-01 100.0% 60.8%
3898397 11.2.1.24 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › SPATA6 0.58 46.0 3.74e-01 94.2% 92.3%
4469841 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.58 45.0 4.10e-01 91.3% 62.1%
3480027 11.2.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › MNNL 0.58 46.0 3.54e-01 91.3% 100.0%
3939286 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.58 45.0 3.72e-01 91.3% 89.0%
3656280 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.57 45.0 3.74e-01 95.7% 98.0%
4862306 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.57 47.0 3.79e-01 92.8% 47.8%
3597467 230.2.1.0 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C 0.57 47.0 3.85e-01 92.8% 50.4%
5028718 223.8.1.0 ↗ a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain 0.56 46.0 4.00e-01 92.8% 59.0%
4635990 230.2.1.0 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C 0.56 47.0 4.01e-01 94.2% 68.7%
4595711 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.56 46.0 3.78e-01 92.8% 48.9%
3745755 3483.1.1.1 ↗ beta sandwiches › P2X purinoceptor › P2X purinoceptor › P2X purinoceptor › P2X_receptor 0.56 42.0 2.70e-01 82.6% 55.3%
4927297 230.2.1.1 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C 0.56 47.0 3.93e-01 94.2% 55.8%
3579209 382.1.1.0 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.56 47.0 3.95e-01 95.7% 55.8%
4943347 230.2.1.0 ↗ a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C 0.55 46.0 3.89e-01 94.2% 55.8%
3472861 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.54 45.0 4.09e-01 97.1% 95.0%
3545017 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 39.0 2.38e-01 78.3% 22.8%
4218947 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 41.0 3.02e-01 89.9% 94.3%
3466219 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.54 44.0 3.01e-01 94.2% 35.5%
3747625 11.1.1.54 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 0.52 41.0 3.32e-01 97.1% 97.6%
5019419 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 42.0 3.54e-01 92.8% 52.0%
2093169 864.1.1.0 ↗ a+b two layers › DLC › DLC › DLC 0.51 43.0 3.55e-01 92.8% 53.3%
3864149 11.1.1.805 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_PDGFR_d4 0.51 36.0 2.92e-01 75.4% 78.6%
1209559 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 41.0 3.22e-01 91.3% 59.9%
4120726 327.16.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.50 40.0 3.73e-01 97.1% 68.9%
4944742 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.37e-01 92.8% 57.7%
3385812 304.45.1.1 ↗ a+b two layers › Alpha-beta plaits › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK › HPPK 0.50 41.0 3.32e-01 94.2% 72.4%
D2 medium residues 31-81_137-181
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5dckA00 1.10.1200.30 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Retrovirus capsid C-terminal domain 0.58 35.0 3.98e-01 78.1% 81.7%
2v6eA01 1.10.287.3180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 37.0 4.02e-01 75.0% 88.0%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.55 37.0 4.19e-01 79.2% 100.0%
7jsnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 39.0 3.08e-01 79.2% 96.1%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 33.0 3.53e-01 96.9% 79.0%
4nv0A02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.50 30.0 3.17e-01 71.9% 65.9%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945879 101.38.1.4 ↗ alpha arrays › HTH › DNA-binding domain of the replication initiator protein ColE2-Rep › DNA-binding domain of the replication initiator protein ColE2-Rep › PriCT_1 0.63 38.0 3.64e-01 77.1% 51.8%
5014896 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.55 45.0 3.76e-01 88.5% 84.7%
3736195 109.4.1.681 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.55 42.0 2.68e-01 80.2% 24.7%
3173859 633.1.1.0 ↗ alpha bundles › Bromodomain-like › Bromodomain › Bromodomain 0.54 37.0 3.61e-01 92.7% 63.8%
4411945 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.51 32.0 3.20e-01 82.3% 59.0%
3262626 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.51 43.0 3.50e-01 95.8% 83.7%