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matrix_protein
Euk-VirDrosophila_affinis_sigmavirus
matrix_protein__YP_009505483__Drosophila_affinis_sigmavirus__1308859
Identity
- Accession:
- YP_009505483 ↗
- Protein ID:
- matrix_protein
- Kingdom:
- euk
Quality
71.5
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Sigmavirus›
Drosophila_affinis_sigmavirus
TaxID: 1308859
Cluster
View cluster (89 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 48-203
Domain cluster:
rep: matrix__YP_010087311__Muir_Springs_virus__932700__D68-219
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06326.19 best | Vesiculo_matrix | 66.9 | 3.40e-18 | 93.6% | 61.5% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lg7A00 | 3.10.460.10 | Alpha Beta › Roll › VSV matrix protein › VSV matrix protein | 0.84 | 73.0 | 7.18e-01 | 100.0% | 86.0% |
| 2w2sA00 | 3.10.460.20 | Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 | 0.82 | 69.0 | 6.80e-01 | 100.0% | 83.4% |
| 6iomB01 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.78 | 28.0 | 4.00e-01 | 70.5% | 67.5% |
| 3jamD02 | 3.30.1140.32 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Ribosomal protein S3, C-terminal domain | 0.66 | 29.0 | 3.21e-01 | 73.7% | 49.6% |
| 2fbjH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 22.0 | 3.32e-01 | 73.1% | 74.0% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 33.0 | 4.13e-01 | 73.1% | 95.6% |
| 1ekrA00 | 3.30.70.640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain | 0.55 | 39.0 | 4.09e-01 | 73.1% | 88.1% |
| 6h8oA00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.53 | 32.0 | 3.84e-01 | 94.9% | 95.8% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.53 | 34.0 | 3.89e-01 | 73.1% | 90.2% |
| 1f3vA00 | 3.30.70.680 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TRADD, N-terminal domain | 0.52 | 46.0 | 4.62e-01 | 100.0% | 94.9% |
| 1azsA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.52 | 40.0 | 3.77e-01 | 84.0% | 66.3% |
| 4nnzA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.52 | 37.0 | 3.48e-01 | 74.4% | 90.9% |
| 1hw7A01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.52 | 44.0 | 4.30e-01 | 92.9% | 93.1% |
| 2ivfC00 | 2.60.40.1190 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 3.33e-01 | 73.1% | 69.6% |
| 3eoqB02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 37.0 | 3.52e-01 | 73.7% | 94.0% |
| 3d3yA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 37.0 | 3.47e-01 | 74.4% | 90.0% |
| 3pfeA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 35.0 | 3.82e-01 | 71.8% | 100.0% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2966642 | 845.1.1.2 ↗ | a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein › Vesiculo_matrix | 0.83 | 75.0 | 6.94e-01 | 100.0% | 77.8% |
| 169957 | 845.1.1.0 ↗ | a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein | 0.82 | 74.0 | 6.96e-01 | 100.0% | 79.9% |
| 184954 | 845.1.1.0 ↗ | a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein | 0.82 | 69.0 | 6.80e-01 | 100.0% | 83.4% |
| 3243630 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.72 | 29.0 | 3.84e-01 | 74.4% | 65.6% |
| 4028203 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.72 | 29.0 | 3.68e-01 | 71.2% | 61.6% |
| 4255187 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.70 | 31.0 | 3.69e-01 | 73.7% | 60.0% |
| 4598977 | 230.2.1.0 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C | 0.70 | 29.0 | 3.53e-01 | 72.4% | 57.3% |
| 4155789 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.70 | 29.0 | 3.38e-01 | 72.4% | 52.5% |
| 4153628 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.69 | 29.0 | 3.52e-01 | 72.4% | 57.3% |
| 4149478 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.69 | 29.0 | 3.35e-01 | 72.4% | 52.5% |
| 4211925 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.69 | 29.0 | 3.18e-01 | 72.4% | 46.7% |
| 3322115 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.69 | 30.0 | 3.51e-01 | 73.7% | 56.5% |
| 4832865 | 230.2.1.1 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › Ribosomal_S3_C | 0.68 | 30.0 | 3.38e-01 | 73.7% | 52.8% |
| 3925462 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.63 | 27.0 | 3.41e-01 | 71.8% | 65.0% |
| 4317100 | 230.2.1.2 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C › VAR1 | 0.59 | 30.0 | 3.46e-01 | 71.8% | 66.1% |
| 4316087 | 230.2.1.0 ↗ | a+b two layers › T-fold › Ribosomal protein S3-C › Ribosomal protein S3-C | 0.58 | 30.0 | 3.45e-01 | 73.7% | 66.7% |
| 3603456 | 304.8.1.82 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 | 0.55 | 32.0 | 3.93e-01 | 73.7% | 95.6% |
| 5048918 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 28.0 | 3.06e-01 | 75.0% | 62.5% |
| 4194439 | 848.1.1.1 ↗ | a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 | 0.52 | 44.0 | 3.87e-01 | 91.0% | 68.1% |
| 3893621 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.52 | 34.0 | 3.71e-01 | 72.4% | 84.2% |
| 3596679 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.51 | 37.0 | 3.81e-01 | 75.6% | 95.5% |
| 3709520 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.51 | 37.0 | 3.87e-01 | 74.4% | 97.1% |
| 3987564 | 309.1.1.4 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C | 0.50 | 36.0 | 3.43e-01 | 73.7% | 90.8% |