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matrix_protein
Euk-VirCacao_swollen_shoot_Togo_A_virus
matrix_protein__YP_009506259__Cacao_swollen_shoot_Togo_A_virus__1960254
Identity
- Accession:
- YP_009506259 ↗
- Protein ID:
- matrix_protein
- Kingdom:
- euk
Quality
75.8
mean pLDDT
Taxonomy
Pararnavirae›
Artverviricota›
Revtraviricetes›
Ortervirales›
Caulimoviridae›
Badnavirus›
Cacao_swollen_shoot_Togo_A_virus
TaxID: 1960254
Cluster
View cluster (18 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-163
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w2sA00 | 3.10.460.20 | Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 | 0.60 | 54.0 | 5.24e-01 | 100.0% | 89.6% |
| 1lg7A00 | 3.10.460.10 | Alpha Beta › Roll › VSV matrix protein › VSV matrix protein | 0.59 | 55.0 | 5.34e-01 | 100.0% | 92.7% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.59 | 37.0 | 4.41e-01 | 82.0% | 98.9% |
| 2zwsA02 | 2.60.40.2300 | Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain | 0.57 | 41.0 | 4.35e-01 | 86.0% | 83.6% |
| 4jb9H01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 37.0 | 3.98e-01 | 85.3% | 87.0% |
| 3w9iA06 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.51 | 34.0 | 3.97e-01 | 81.3% | 99.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2966642 | 845.1.1.2 ↗ | a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein › Vesiculo_matrix | 0.61 | 56.0 | 5.22e-01 | 100.0% | 83.6% |
| 3018445 | 331.3.1.3 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START | 0.52 | 38.0 | 3.36e-01 | 76.0% | 76.7% |
| 3536617 | 223.1.1.29 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 | 0.52 | 39.0 | 4.20e-01 | 88.0% | 91.5% |
| 4969506 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.50 | 41.0 | 4.20e-01 | 88.7% | 92.3% |
| 3529331 | 11.1.1.488 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF4707 | 0.50 | 39.0 | 3.91e-01 | 83.3% | 83.9% |
| 5058189 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.50 | 34.0 | 3.81e-01 | 86.7% | 96.2% |