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matrix_protein
Euk-VirBombali_ebolavirus
matrix_protein__YP_009513276__Bombali_ebolavirus__2010960
Identity
- Accession:
- YP_009513276 ↗
- Protein ID:
- matrix_protein
- Kingdom:
- euk
Quality
55.1
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Filoviridae›
Orthoebolavirus›
Bombali_virus
TaxID: 2010960
Cluster
View cluster (9 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 54-190
Domain cluster:
rep: matrix_protein__YP_009094039__Pneumovirus_dog_Bari_100-12_ITA_2012__2482952__D2-120
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07447.18 best | Matrix_Filo | 246.2 | 5.40e-73 | 100.0% | 51.4% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1h2cA00 | 2.70.20.20 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain | 0.85 | 72.0 | 7.60e-01 | 89.1% | 97.6% |
| 2vqpA01 | 2.70.20.30 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › HRSV-S2 matrix protein, N-terminal domain | 0.69 | 56.0 | 6.00e-01 | 99.3% | 100.0% |
| 4g1lA01 | 2.70.20.50 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Viral matrix protein, N-terminal domain | 0.68 | 62.0 | 5.83e-01 | 100.0% | 82.2% |
| 4qhpA04 | 2.60.40.1840 | Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain | 0.59 | 29.0 | 3.31e-01 | 81.8% | 62.4% |
| 1egjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 32.0 | 3.65e-01 | 99.3% | 79.2% |
| 2l2nA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 23.0 | 3.05e-01 | 79.6% | 73.2% |
| 5mw5A01 | 2.60.40.3510 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 33.0 | 3.26e-01 | 94.9% | 56.3% |
| 3icuA01 | 3.50.30.30 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › | 0.52 | 42.0 | 3.99e-01 | 85.4% | 100.0% |
| 2je8B05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 31.0 | 3.67e-01 | 90.5% | 91.0% |
| 2xskA00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 31.0 | 3.61e-01 | 97.8% | 87.4% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3056890 | 54.1.1.3 ↗ | beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › VP40 | 0.94 | 91.0 | 8.70e-01 | 100.0% | 89.5% |
| 4987354 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.68 | 48.0 | 5.42e-01 | 87.6% | 98.0% |
| 863407 | 54.1.1.1 ↗ | beta barrels › EV matrix protein › EV matrix protein › EV matrix protein › Matrix | 0.66 | 60.0 | 5.77e-01 | 100.0% | 88.2% |
| 3069712 | 2.4.1.13 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › DUF7407 | 0.61 | 25.0 | 3.31e-01 | 87.6% | 68.6% |
| 4949720 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.58 | 46.0 | 4.97e-01 | 86.9% | 99.1% |
| 3894031 | 330.1.1.6 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C | 0.58 | 26.0 | 3.21e-01 | 78.8% | 65.9% |
| 4969403 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.58 | 48.0 | 4.95e-01 | 90.5% | 99.2% |
| 5010181 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 42.0 | 4.34e-01 | 96.4% | 83.1% |
| 4589827 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.55 | 46.0 | 4.82e-01 | 89.8% | 98.4% |
| 5000149 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 35.0 | 3.71e-01 | 95.6% | 73.6% |
| 4961766 | 241.15.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › Spo0M | 0.51 | 26.0 | 2.84e-01 | 96.4% | 54.8% |
| 3623001 | 284.2.1.0 ↗ | a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain | 0.51 | 30.0 | 3.81e-01 | 86.1% | 100.0% |
| 3244569 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.50 | 27.0 | 3.38e-01 | 83.2% | 83.5% |
D2
high
residues 230-307