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matrix_protein
Euk-VirCaligus_rogercresseyi_rhabdovirus
matrix_protein__YP_009666513__Caligus_rogercresseyi_rhabdovirus__1921414
Identity
- Accession:
- YP_009666513 ↗
- Protein ID:
- matrix_protein
- Kingdom:
- euk
Quality
71.4
mean pLDDT
Taxonomy
Orthornavirae›
Negarnaviricota›
Monjiviricetes›
Mononegavirales›
Rhabdoviridae›
Caligrhavirus›
Caligus_rogercresseyi_rhabdovirus
TaxID: 1921414
Cluster
View cluster (89 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 59-215
Domain cluster:
rep: matrix__YP_010087311__Muir_Springs_virus__932700__D68-219
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lg7A00 | 3.10.460.10 | Alpha Beta › Roll › VSV matrix protein › VSV matrix protein | 0.82 | 77.0 | 7.65e-01 | 100.0% | 94.5% |
| 2w2sA00 | 3.10.460.20 | Alpha Beta › Roll › VSV matrix protein › Rhabdovirus matrix protein M2 | 0.81 | 73.0 | 7.28e-01 | 100.0% | 92.0% |
| 6iomB01 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.76 | 27.0 | 3.93e-01 | 70.7% | 67.5% |
| 1ywhA01 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.73 | 27.0 | 3.80e-01 | 71.3% | 66.7% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 34.0 | 4.23e-01 | 73.2% | 95.6% |
| 2dt9A02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.58 | 31.0 | 4.03e-01 | 72.0% | 100.0% |
| 7e6gA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.58 | 40.0 | 4.08e-01 | 79.6% | 73.2% |
| 2ca9A02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.58 | 32.0 | 4.04e-01 | 73.9% | 94.4% |
| 2rrnA01 | 3.30.70.2040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 32.0 | 4.10e-01 | 71.3% | 100.0% |
| 3gtyX02 | 3.10.50.30 | Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain | 0.57 | 24.0 | 3.30e-01 | 73.9% | 75.0% |
| 4frwA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 32.0 | 3.92e-01 | 75.2% | 89.6% |
| 1azsA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.56 | 40.0 | 3.82e-01 | 85.4% | 61.6% |
| 8ediA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 34.0 | 4.01e-01 | 74.5% | 90.4% |
| 6vh5C03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 32.0 | 4.08e-01 | 86.6% | 100.0% |
| 3mgjA00 | 3.30.70.2690 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain | 0.55 | 34.0 | 4.17e-01 | 76.4% | 100.0% |
| 3r5gA00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.55 | 41.0 | 3.88e-01 | 84.7% | 63.6% |
| 3hvwA00 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.54 | 38.0 | 3.82e-01 | 79.6% | 69.8% |
| 3luyA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.54 | 32.0 | 3.98e-01 | 79.0% | 100.0% |
| 6yiiA02 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.54 | 43.0 | 3.90e-01 | 87.3% | 62.2% |
| 1q5yC00 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.54 | 30.0 | 3.85e-01 | 72.6% | 100.0% |
| 4dezA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.54 | 29.0 | 3.49e-01 | 72.0% | 78.8% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.53 | 31.0 | 3.07e-01 | 74.5% | 51.5% |
| 2mq8A00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.53 | 34.0 | 3.92e-01 | 72.6% | 90.2% |
| 4acvA00 | 3.30.2000.30 | Alpha Beta › 2-Layer Sandwich › STM4215-like › | 0.53 | 35.0 | 3.97e-01 | 70.7% | 89.1% |
| 2wz1B00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.53 | 39.0 | 3.70e-01 | 85.4% | 62.8% |
| 1ab8A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.53 | 41.0 | 3.97e-01 | 84.7% | 72.3% |
| 4q7aC02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 36.0 | 4.13e-01 | 72.0% | 100.0% |
| 1ekrA00 | 3.30.70.640 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Molybdopterin cofactor biosynthesis C (MoaC) domain | 0.52 | 37.0 | 3.91e-01 | 73.9% | 88.1% |
| 5xoyB02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 35.0 | 4.10e-01 | 72.6% | 100.0% |
| 6ttrA01 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.52 | 38.0 | 3.60e-01 | 77.1% | 63.0% |
| 1xmbA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 33.0 | 3.97e-01 | 71.3% | 100.0% |
| 6zxbA02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.52 | 38.0 | 3.95e-01 | 77.1% | 82.6% |
| 6ofsA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 37.0 | 3.52e-01 | 73.9% | 94.0% |
| 1s7hA02 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 28.0 | 3.56e-01 | 73.2% | 97.6% |
| 1f3vA00 | 3.30.70.680 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › TRADD, N-terminal domain | 0.51 | 43.0 | 4.34e-01 | 91.7% | 94.9% |
| 3vskA03 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 38.0 | 2.98e-01 | 79.0% | 83.8% |
| 2g47A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.50 | 37.0 | 3.28e-01 | 75.2% | 77.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 169957 | 845.1.1.0 ↗ | a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein | 0.83 | 79.0 | 7.40e-01 | 100.0% | 87.5% |
| 2966642 | 845.1.1.2 ↗ | a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein › Vesiculo_matrix | 0.82 | 78.0 | 7.24e-01 | 100.0% | 85.2% |
| 184954 | 845.1.1.0 ↗ | a+b complex topology › VSV matrix protein › VSV matrix protein › VSV matrix protein | 0.81 | 73.0 | 7.28e-01 | 100.0% | 92.0% |
| 3842474 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.75 | 28.0 | 3.39e-01 | 72.0% | 51.4% |
| 3925462 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.66 | 29.0 | 3.60e-01 | 74.5% | 65.0% |
| 3897495 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 35.0 | 3.84e-01 | 72.6% | 66.2% |
| 4936039 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.61 | 41.0 | 4.76e-01 | 74.5% | 97.3% |
| 4219210 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.61 | 41.0 | 4.78e-01 | 74.5% | 98.2% |
| 3970088 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 34.0 | 4.15e-01 | 74.5% | 92.6% |
| 4026201 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.58 | 43.0 | 4.33e-01 | 75.8% | 100.0% |
| 5024024 | 304.16.1.1 ↗ | a+b two layers › Alpha-beta plaits › eEF-1beta-like › eEF-1beta-like › EF1_GNE | 0.58 | 35.0 | 4.26e-01 | 73.2% | 97.9% |
| 3603456 | 304.8.1.82 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF27325 | 0.56 | 32.0 | 4.04e-01 | 74.5% | 96.7% |
| 4613881 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.55 | 31.0 | 3.89e-01 | 73.2% | 94.3% |
| 4977318 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.55 | 32.0 | 4.00e-01 | 74.5% | 97.8% |
| 3999306 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.54 | 42.0 | 3.74e-01 | 85.4% | 57.7% |
| 3616629 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.54 | 43.0 | 3.65e-01 | 84.7% | 56.2% |
| 3601652 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.53 | 36.0 | 4.09e-01 | 76.4% | 93.0% |
| 302769 | 304.8.1.4 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NikR_C | 0.53 | 29.0 | 3.58e-01 | 75.8% | 86.3% |
| 4032336 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.53 | 34.0 | 3.93e-01 | 79.6% | 94.3% |
| None | — | 0.53 | 40.0 | 3.73e-01 | 85.4% | 63.3% | |
| 3175186 | 11.2.1.17 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 | 0.52 | 37.0 | 3.91e-01 | 73.9% | 92.3% |
| 3301512 | 309.1.1.6 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › Peptidase_M16_C,Peptidase_M16_M | 0.51 | 37.0 | 3.30e-01 | 75.2% | 74.2% |
| 3971024 | 309.1.1.9 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase › PQQ_syn_pqqF_N_2 | 0.51 | 36.0 | 3.46e-01 | 74.5% | 77.9% |
| 3728906 | 304.25.1.1 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer | 0.51 | 36.0 | 4.06e-01 | 72.6% | 99.1% |